miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48718_mtr-miR169b:pmrd
          Length = 121

 Score =  240 bits (121), Expect = 2e-64
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaggcagagagagtaatgcagccaaggatgacttgccgacaacgttggcgaatgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aagaggcagagagagtaatgcagccaaggatgacttgccgacaacgttggcgaatgttca 60

                                                                       
Query: 61  tgtgatttctgcctcattgtgccggccagttgtccttggctatgttagtctctcatcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtgatttctgcctcattgtgccggccagttgtccttggctatgttagtctctcatcttc 120

            
Query: 121 t 121
           |
Sbjct: 121 t 121




>48717_mtr-miR169a:pmrd
          Length = 121

 Score =  224 bits (113), Expect = 1e-59
 Identities = 119/121 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaggcagagagagtaatgcagccaaggatgacttgccgacaacgttggcgaatgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1   aagaggcagagagagtaatgcagccaaggatgacttgccgacaacattggcgaatgttca 60

                                                                       
Query: 61  tgtgatttctgcctcattgtgccggccagttgtccttggctatgttagtctctcatcttc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61  tgtgatttctgcctcattgtgccggcaagttgtccttggctatgttagtctctcatcttc 120

            
Query: 121 t 121
           |
Sbjct: 121 t 121




>48719_mtr-miR169c:pmrd
          Length = 82

 Score =  147 bits (74), Expect = 2e-36
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                       
Query: 21  cagccaaggatgacttgccgacaacgttggcgaatgttcatgtgatttctgcctcattgt 80
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 82  cagccaaggatgacttgccgacaacattggcgaatgttcatgtgatttctgcctcattgt 23

                                 
Query: 81  gccggccagttgtccttggcta 102
           |||||| |||||||||||||||
Sbjct: 22  gccggcaagttgtccttggcta 1




>48561_gma-miR169a:pmrd
          Length = 121

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 1  aagaggcagagagagtaatgcagccaaggatgacttgccg 40
          |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 1  aagaggaagagagagtgatgcagccaaggatgacttgccg 40




>52003_ptc-miRf10181-akr:pmrd
          Length = 113

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 18 atgcagccaaggatgacttgccgac 42
          |||||||||||||||||||||||||
Sbjct: 7  atgcagccaaggatgacttgccgac 31




>51660_ptc-miR169c:pmrd
          Length = 102

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 18 atgcagccaaggatgacttgccgac 42
          |||||||||||||||||||||||||
Sbjct: 8  atgcagccaaggatgacttgccgac 32




>51659_ptc-miR169b:pmrd
          Length = 113

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 18 atgcagccaaggatgacttgccgac 42
          |||||||||||||||||||||||||
Sbjct: 8  atgcagccaaggatgacttgccgac 32




>51652_ptc-miR169a:pmrd
          Length = 165

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 18 atgcagccaaggatgacttgccgac 42
          |||||||||||||||||||||||||
Sbjct: 8  atgcagccaaggatgacttgccgac 32




>48309_bdi-miR169a:pmrd
          Length = 121

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 18 atgcagccaaggatgacttgccgac 42
          |||||||||||||||||||||||||
Sbjct: 13 atgcagccaaggatgacttgccgac 37




>47674_ath-miRf10574-akr:pmrd
          Length = 123

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 16  taatgcagccaaggatgacttgccg 40
           |||||||||||||||||||||||||
Sbjct: 117 taatgcagccaaggatgacttgccg 93




>46961_ath-miR169b:pmrd
          Length = 181

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 taatgcagccaaggatgacttgccg 40
          |||||||||||||||||||||||||
Sbjct: 38 taatgcagccaaggatgacttgccg 62




>54809_vvi-miR169g:pmrd
          Length = 121

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgcagccaaggatgacttgccgac 42
          ||||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccgac 34




>54805_vvi-miR169c:pmrd
          Length = 90

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 aatgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||||
Sbjct: 9  aatgcagccaaggatgacttgccg 32




>54803_vvi-miR169a:pmrd
          Length = 124

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 aatgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||||
Sbjct: 9  aatgcagccaaggatgacttgccg 32




>51664_ptc-miR169g:pmrd
          Length = 106

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 aatgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||||
Sbjct: 7  aatgcagccaaggatgacttgccg 30




>51661_ptc-miR169d:pmrd
          Length = 111

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 aatgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||||
Sbjct: 7  aatgcagccaaggatgacttgccg 30




>51339_phy-miR169:pmrd
          Length = 146

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 aatgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||||
Sbjct: 11 aatgcagccaaggatgacttgccg 34




>50630_osa-miRf11415-akr:pmrd
          Length = 147

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                  
Query: 1  aagaggcagagagagtaatgcagccaaggatgacttgccg 40
          |||||||||||||    |||||||||||||||||||||||
Sbjct: 2  aagaggcagagagcaggatgcagccaaggatgacttgccg 41




>48877_osa-miR169b:pmrd
          Length = 128

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 aatgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||||
Sbjct: 7  aatgcagccaaggatgacttgccg 30




>47961_ath-miRf10861-akr:pmrd
          Length = 109

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 aatgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||||
Sbjct: 1  aatgcagccaaggatgacttgccg 24




>46875_aqc-miR169c:pmrd
          Length = 111

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 aatgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||||
Sbjct: 1  aatgcagccaaggatgacttgccg 24




>55005_zma-miR169c:pmrd
          Length = 134

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 atgcagccaaggatgacttgccg 40
          |||||||||||||||||||||||
Sbjct: 18 atgcagccaaggatgacttgccg 40




>55004_zma-miR169b:pmrd
          Length = 156

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgcagccaaggatgacttgccga 41
          |||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccga 41




>55003_zma-miR169a:pmrd
          Length = 130

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgcagccaaggatgacttgccga 41
          |||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccga 41




>54825_vvi-miR169w:pmrd
          Length = 143

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 19 tgcagccaaggatgacttgccgacaac 45
          |||||||||||||||||||||| ||||
Sbjct: 11 tgcagccaaggatgacttgccggcaac 37




>54808_vvi-miR169f:pmrd
          Length = 184

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgcagccaaggatgacttgccga 41
          |||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccga 33




>54549_sly-miR169c:pmrd
          Length = 147

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgcagccaaggatgacttgccga 41
          |||||||||||||||||||||||
Sbjct: 39 tgcagccaaggatgacttgccga 61




>54091_ptc-miRf12269-akr:pmrd
          Length = 122

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 10  agagagtaatgcagccaaggatgacttgccg 40
           |||| ||||| ||||||||||||||||||||
Sbjct: 122 agagtgtaattcagccaaggatgacttgccg 92




>50631_osa-miRf11416-akr:pmrd
          Length = 141

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 18  atgcagccaaggatgacttgccg 40
           |||||||||||||||||||||||
Sbjct: 126 atgcagccaaggatgacttgccg 104




>49845_osa-miRf10630-akr:pmrd
          Length = 114

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 18  atgcagccaaggatgacttgccg 40
           |||||||||||||||||||||||
Sbjct: 106 atgcagccaaggatgacttgccg 84




>48891_osa-miR169p:pmrd
          Length = 126

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 18  atgcagccaaggatgacttgccg 40
           |||||||||||||||||||||||
Sbjct: 119 atgcagccaaggatgacttgccg 97




>48878_osa-miR169c:pmrd
          Length = 112

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 atgcagccaaggatgacttgccg 40
          |||||||||||||||||||||||
Sbjct: 8  atgcagccaaggatgacttgccg 30




>48876_osa-miR169a:pmrd
          Length = 173

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgcagccaaggatgacttgccga 41
          |||||||||||||||||||||||
Sbjct: 36 tgcagccaaggatgacttgccga 58




>48562_gma-miR169b:pmrd
          Length = 183

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgcagccaaggatgacttgccga 41
          |||||||||||||||||||||||
Sbjct: 9  tgcagccaaggatgacttgccga 31




>48351_bna-miR169b:pmrd
          Length = 188

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgcagccaaggatgacttgccga 41
          |||||||||||||||||||||||
Sbjct: 16 tgcagccaaggatgacttgccga 38




>48350_bna-miR169a:pmrd
          Length = 132

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgcagccaaggatgacttgccga 41
          |||||||||||||||||||||||
Sbjct: 17 tgcagccaaggatgacttgccga 39




>46960_ath-miR169a:pmrd
          Length = 226

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgcagccaaggatgacttgccga 41
          |||||||||||||||||||||||
Sbjct: 16 tgcagccaaggatgacttgccga 38




>55021_zma-miR169s:pmrd
          Length = 150

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 cagccaaggatgacttgccgac 42
          ||||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccgac 22




>54821_vvi-miR169s:pmrd
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 tgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32




>54813_vvi-miR169k:pmrd
          Length = 122

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 tgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32




>54812_vvi-miR169j:pmrd
          Length = 122

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 tgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32




>54547_sly-miR169a:pmrd
          Length = 149

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 tgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||
Sbjct: 39 tgcagccaaggatgacttgccg 60




>54367_ptr-miR169a:pmrd
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 cagccaaggatgacttgccgac 42
          ||||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccgac 22




>52526_ptc-miRf10704-akr:pmrd
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 15  gtaatgcagccaaggatgacttgccg 40
           ||||| ||||||||||||||||||||
Sbjct: 116 gtaattcagccaaggatgacttgccg 91




>51665_ptc-miR169h:pmrd
          Length = 118

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 gtaatgcagccaaggatgacttgccg 40
          ||||| ||||||||||||||||||||
Sbjct: 5  gtaattcagccaaggatgacttgccg 30




>51663_ptc-miR169f:pmrd
          Length = 239

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 tgcagccaaggatgacttgccg 40
          ||||||||||||||||||||||
Sbjct: 9  tgcagccaaggatgacttgccg 30




>48563_gma-miR169c:pmrd
          Length = 115

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 agccaaggatgacttgccgaca 43
          ||||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgaca 33




>55023_zma-miR169u:pmrd
          Length = 90

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 cagccaaggatgacttgccga 41
          |||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccga 21




>55022_zma-miR169t:pmrd
          Length = 116

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 cagccaaggatgacttgccga 41
          |||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccga 21




>54437_sbi-miR169a:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 cagccaaggatgacttgccga 41
          |||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccga 21




>51662_ptc-miR169e:pmrd
          Length = 166

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 gcagccaaggatgacttgccg 40
          |||||||||||||||||||||
Sbjct: 10 gcagccaaggatgacttgccg 30




>48310_bdi-miR169b:pmrd
          Length = 106

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 8  agagagagtaatgcagccaaggatgacttgccg 40
          |||||| | |||| |||||||||||||||||||
Sbjct: 6  agagagtggaatgtagccaaggatgacttgccg 38




>46859_ama-miR169:pmrd
          Length = 100

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 agccaaggatgacttgccgac 42
          |||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccgac 35




>55020_zma-miR169r:pmrd
          Length = 95

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 cagccaaggatgacttgccg 40
          ||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccg 20




>54816_vvi-miR169n:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 22 agccaaggatgacttgccgacaac 45
          ||||||||||||||||||| ||||
Sbjct: 13 agccaaggatgacttgccggcaac 36




>54447_sbi-miR169k:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 cagccaaggatgacttgccg 40
          ||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccg 20




>54438_sbi-miR169b:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 cagccaaggatgacttgccg 40
          ||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccg 20




>51676_ptc-miR169s:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 cagccaaggatgacttgccg 40
          ||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccg 31




>48639_gso-miR169a:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 cagccaaggatgacttgccg 40
          ||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccg 20




>48564_gma-miR169p:pmrd
          Length = 111

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 cagccaaggatgacttgccg 40
          ||||||||||||||||||||
Sbjct: 1  cagccaaggatgacttgccg 20




>46964_ath-miR169e:pmrd
          Length = 217

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 agccaaggatgacttgccga 41
          ||||||||||||||||||||
Sbjct: 71 agccaaggatgacttgccga 90




>46963_ath-miR169d:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 agccaaggatgacttgccga 41
          ||||||||||||||||||||
Sbjct: 43 agccaaggatgacttgccga 62




>46962_ath-miR169c:pmrd
          Length = 411

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  cagccaaggatgacttgccg 40
           ||||||||||||||||||||
Sbjct: 113 cagccaaggatgacttgccg 132