miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48723_mtr-miR171g:pmrd
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 aatgagatattggcctggttcactcagaccaagtgataaaccactaagatacagtattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatgagatattggcctggttcactcagaccaagtgataaaccactaagatacagtattgt 60
Query: 61 acttgtgtggttttgggtttgattgagccgtgccaatatctcact 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acttgtgtggttttgggtttgattgagccgtgccaatatctcact 105
>48722_mtr-miR171d:pmrd
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 aatgagatattggcctggttcactcagaccaagtgataaaccactaagatacagtattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatgagatattggcctggttcactcagaccaagtgataaaccactaagatacagtattgt 60
Query: 61 acttgtgtggttttgggtttgattgagccgtgccaatatctcact 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acttgtgtggttttgggtttgattgagccgtgccaatatctcact 105
>54551_sly-miR171a:pmrd
Length = 122
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatctca 103
|||||||||||||||||||||||||||
Sbjct: 84 gtttgattgagccgtgccaatatctca 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 gatattggcctggttcactcagac 29
||||||||||||||||||||||||
Sbjct: 16 gatattggcctggttcactcagac 39
>51692_ptc-miR171i:pmrd
Length = 129
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatctca 103
||||||||||||||||||||||||||
Sbjct: 98 tttgattgagccgtgccaatatctca 123
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gatattggcctggttcactcaga 28
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>46876_aqc-miR171a:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatct 101
|||||||||||||||||||||||||
Sbjct: 77 gtttgattgagccgtgccaatatct 101
>55031_zma-miR171d:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctca 103
||||||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatctca 105
>54831_vvi-miR171d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatc 100
||||||||||||||||||||||||
Sbjct: 64 gtttgattgagccgtgccaatatc 87
>54455_sbi-miR171d:pmrd
Length = 154
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctca 103
||||||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatctca 138
>54452_sbi-miR171a:pmrd
Length = 161
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatc 100
||||||||||||||||||||||||
Sbjct: 119 gtttgattgagccgtgccaatatc 142
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatc 100
||||||||||||||||||||||||
Sbjct: 60 gtttgattgagccgtgccaatatc 83
>51685_ptc-miR171b:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatc 100
||||||||||||||||||||||||
Sbjct: 68 gtttgattgagccgtgccaatatc 91
>51684_ptc-miR171a:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatc 100
||||||||||||||||||||||||
Sbjct: 69 gtttgattgagccgtgccaatatc 92
>48898_osa-miR171d:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctca 103
||||||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatctca 128
>48403_bra-miR171a:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatc 100
||||||||||||||||||||||||
Sbjct: 59 gtttgattgagccgtgccaatatc 82
>48386_bol-miR171a:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatc 100
||||||||||||||||||||||||
Sbjct: 65 gtttgattgagccgtgccaatatc 88
>48367_bna-miR171e:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatc 100
||||||||||||||||||||||||
Sbjct: 64 gtttgattgagccgtgccaatatc 87
>48366_bna-miR171d:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gtttgattgagccgtgccaatatc 100
||||||||||||||||||||||||
Sbjct: 65 gtttgattgagccgtgccaatatc 88
>46880_aqc-miR171e:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 77 gtttgattgagccgtgccaatatc 100
||||||||||||||||||||||||
Sbjct: 24 gtttgattgagccgtgccaatatc 1
>46879_aqc-miR171d:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatct 101
||||||||||||||||||||||||
Sbjct: 82 tttgattgagccgtgccaatatct 105
>55029_zma-miR171b:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatc 100
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>54830_vvi-miR171c:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatc 100
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>54462_sbi-miR171k:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatc 100
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatc 82
>51346_ppe-miR171:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatc 100
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>51345_ppe-miR170:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatc 100
|||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatc 87
>48897_osa-miR171c:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatc 100
|||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatc 89
>48896_osa-miR171b:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatc 100
|||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatc 90
>48407_bra-miR171e:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gatattggcctggttcactcaga 28
|||||||||||||||||||||||
Sbjct: 18 gatattggcctggttcactcaga 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctca 103
||||||||||| ||||||||||||
Sbjct: 84 tgattgagccgcgccaatatctca 107
>48369_bna-miR171g:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gatattggcctggttcactcaga 28
|||||||||||||||||||||||
Sbjct: 21 gatattggcctggttcactcaga 43
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctca 103
||||||||||| ||||||||||||
Sbjct: 78 tgattgagccgcgccaatatctca 101
>48368_bna-miR171f:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gatattggcctggttcactcaga 28
|||||||||||||||||||||||
Sbjct: 18 gatattggcctggttcactcaga 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctca 103
||||||||||| ||||||||||||
Sbjct: 84 tgattgagccgcgccaatatctca 107
>48312_bdi-miR171c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatc 100
|||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatc 84
>46980_ath-miR171m:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gatattggcctggttcactcaga 28
|||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcaga 23
>46979_ath-miR171c:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tttgattgagccgtgccaatatc 100
|||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatc 107
>46977_ath-miR171a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gatattggcctggttcactcaga 28
|||||||||||||||||||||||
Sbjct: 17 gatattggcctggttcactcaga 39
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctca 103
||||||||||| ||||||||||||
Sbjct: 88 tgattgagccgcgccaatatctca 111
>46975_ath-miR170m:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gatattggcctggttcactcaga 28
|||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcaga 23
>55039_zma-miR171m:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 ttgattgagccgtgccaatatc 100
||||||||||||||||||||||
Sbjct: 92 ttgattgagccgtgccaatatc 113
>55036_zma-miR171i:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 ttgattgagccgtgccaatatc 100
||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatc 85
>55033_zma-miR171f:pmrd
Length = 155
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 ttgattgagccgtgccaatatc 100
||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatc 135
>55032_zma-miR171e:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatct 101
||||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatct 108
>55024_zma-miR170m:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 ttgattgagccgtgccaatatc 100
||||||||||||||||||||||
Sbjct: 94 ttgattgagccgtgccaatatc 115
>54460_sbi-miR171i:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatct 101
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatct 89
>51691_ptc-miR171h:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctcact 105
||||||||||||||||||||| ||||
Sbjct: 71 tgattgagccgtgccaatatcacact 96
>51690_ptc-miR171g:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctcact 105
||||||||||||||||||||| ||||
Sbjct: 71 tgattgagccgtgccaatatcacact 96
>51689_ptc-miR171f:pmrd
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatct 101
||||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatct 122
>48899_osa-miR171e:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatct 101
||||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatct 110
>55037_zma-miR171j:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatc 110
>54836_vvi-miR171i:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>54828_vvi-miR171a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>54680_tae-miR170b:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatatc 94
>54453_sbi-miR171b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 60 tgattgagccgtgccaatatc 80
>51688_ptc-miR171e:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatc 85
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>48905_osa-miR171n:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48900_osa-miR171f:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatc 117
>48894_osa-miR170b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
>46877_aqc-miR171b:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatc 100
|||||||||||||||||||||
Sbjct: 55 tgattgagccgtgccaatatc 75
>46851_ace-miR171a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctcac 104
||||||||||| |||||||||||||
Sbjct: 1 tgattgagccgcgccaatatctcac 25
>46849_ace-miR170c:pmrd
Length = 55
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctcac 104
||||||||||| |||||||||||||
Sbjct: 1 tgattgagccgcgccaatatctcac 25
>46847_ace-miR170a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 80 tgattgagccgtgccaatatctcac 104
||||||||||| |||||||||||||
Sbjct: 1 tgattgagccgcgccaatatctcac 25
