miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48151_ath-miRf11051-akr:pmrd
Length = 133
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 84 tatgagaatcctgatgatgctgcagctgca 113
|||||||||| |||||||||||||||||||
Sbjct: 94 tatgagaatcttgatgatgctgcagctgca 123
>47855_ath-miRf10755-akr:pmrd
Length = 133
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 84 tatgagaatcctgatgatgctgcagctgca 113
|||||||||| |||||||||||||||||||
Sbjct: 40 tatgagaatcttgatgatgctgcagctgca 11
>47545_ath-miRf10445-akr:pmrd
Length = 131
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 84 tatgagaatcctgatgatgctgcagctgca 113
|||||||||| |||||||||||||||||||
Sbjct: 93 tatgagaatcttgatgatgctgcagctgca 122
>46986_ath-miR172c:pmrd
Length = 133
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 84 tatgagaatcctgatgatgctgcagctgca 113
|||||||||| |||||||||||||||||||
Sbjct: 94 tatgagaatcttgatgatgctgcagctgca 123
>48666_hvv-miR172c:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgcagc 109
|||||||||||||||||||||||
Sbjct: 100 gagaatcctgatgatgctgcagc 122
>48314_bdi-miR172d:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgcagc 109
|||||||||||||||||||||||
Sbjct: 71 gagaatcctgatgatgctgcagc 93
>54684_tae-miR172b:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 agaatcctgatgatgctgcagc 109
||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagc 22
>54683_tae-miR172a:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 agaatcctgatgatgctgcagc 109
||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagc 22
>54641_sof-miR172a:pmrd
Length = 300
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgcag 108
||||||||||||||||||||||
Sbjct: 279 gagaatcctgatgatgctgcag 300
>51549_psi-miR172:pmrd
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 tgagaatcctgatgatgctgca 107
||||||||||||||||||||||
Sbjct: 46 tgagaatcctgatgatgctgca 67
>51337_pga-miR172:pmrd
Length = 248
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 tgagaatcctgatgatgctgca 107
||||||||||||||||||||||
Sbjct: 226 tgagaatcctgatgatgctgca 247
>48913_osa-miR172p:pmrd
Length = 318
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgcag 108
||||||||||||||||||||||
Sbjct: 297 gagaatcctgatgatgctgcag 318
>48912_osa-miR172o:pmrd
Length = 53
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 agaatcctgatgatgctgcagc 109
||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagc 22
>48911_osa-miR172n:pmrd
Length = 62
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgcag 108
||||||||||||||||||||||
Sbjct: 41 gagaatcctgatgatgctgcag 62
>48910_osa-miR172m:pmrd
Length = 297
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgcag 108
||||||||||||||||||||||
Sbjct: 276 gagaatcctgatgatgctgcag 297
>48667_hvv-miR172d:pmrd
Length = 272
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgcag 108
||||||||||||||||||||||
Sbjct: 251 gagaatcctgatgatgctgcag 272
>48665_hvv-miR172b:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgcag 108
||||||||||||||||||||||
Sbjct: 69 gagaatcctgatgatgctgcag 90
>48664_hvv-miR172a:pmrd
Length = 255
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgcag 108
||||||||||||||||||||||
Sbjct: 234 gagaatcctgatgatgctgcag 255
>46989_ath-miR172m:pmrd
Length = 141
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 agaatcctgatgatgctgcagc 109
||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagc 22
>55047_zma-miR172n:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgca 107
|||||||||||||||||||||
Sbjct: 60 gagaatcctgatgatgctgca 80
>55046_zma-miR172m:pmrd
Length = 455
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 agaatcctgatgatgctgcag 108
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>54755_tca-miR172:pmrd
Length = 240
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 agaatcctgatgatgctgcag 108
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>51706_ptc-miR172i:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 gagaatcctgatgatgctgca 107
|||||||||||||||||||||
Sbjct: 96 gagaatcctgatgatgctgca 116
>48410_bra-miR172b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 atatgagaatcctgatgatgctgca 107
||||||||||| |||||||||||||
Sbjct: 77 atatgagaatcttgatgatgctgca 101
>48409_bra-miR172b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 atatgagaatcctgatgatgctgca 107
||||||||||| |||||||||||||
Sbjct: 77 atatgagaatcttgatgatgctgca 101
>48408_bra-miR172a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 atatgagaatcctgatgatgctgca 107
||||||||||| |||||||||||||
Sbjct: 82 atatgagaatcttgatgatgctgca 106
>48388_bol-miR172b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 atatgagaatcctgatgatgctgca 107
||||||||||| |||||||||||||
Sbjct: 77 atatgagaatcttgatgatgctgca 101
>48387_bol-miR172a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 atatgagaatcctgatgatgctgca 107
||||||||||| |||||||||||||
Sbjct: 82 atatgagaatcttgatgatgctgca 106
>47664_ath-miRf10564-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 atatgagaatcctgatgatgctgca 107
||||||||||| |||||||||||||
Sbjct: 70 atatgagaatcttgatgatgctgca 94
>46985_ath-miR172b:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 atatgagaatcctgatgatgctgca 107
||||||||||| |||||||||||||
Sbjct: 66 atatgagaatcttgatgatgctgca 90
>46984_ath-miR172b:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 atatgagaatcctgatgatgctgca 107
||||||||||| |||||||||||||
Sbjct: 66 atatgagaatcttgatgatgctgca 90
>46882_aqc-miR172a:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 atatgagaatcctgatgatgctgca 107
||||||||||| |||||||||||||
Sbjct: 93 atatgagaatcttgatgatgctgca 117
>54839_vvi-miR172c:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tggagcatcatcaggattcacaag 29
||||||||||||| ||||||||||
Sbjct: 10 tggagcatcatcaagattcacaag 33
>53842_ptc-miRf12020-akr:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tggagcatcatcaggattcacaag 29
||||||||||||| ||||||||||
Sbjct: 8 tggagcatcatcaagattcacaag 31
>52845_ptc-miRf11023-akr:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ggtggagcatcatcaggattcaca 27
||||||||||||||| ||||||||
Sbjct: 6 ggtggagcatcatcaagattcaca 29
>52375_ptc-miRf10553-akr:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tggagcatcatcaggattcacaag 29
||||||||||||| ||||||||||
Sbjct: 8 tggagcatcatcaagattcacaag 31
>51903_ptc-miRf10081-akr:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ggtggagcatcatcaggattcaca 27
||||||||||||||| ||||||||
Sbjct: 13 ggtggagcatcatcaagattcaca 36
>51704_ptc-miR172g:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tggagcatcatcaggattcacaag 29
||||||||||||| ||||||||||
Sbjct: 12 tggagcatcatcaagattcacaag 35
>51699_ptc-miR172b:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ggtggagcatcatcaggattcaca 27
||||||||||||||| ||||||||
Sbjct: 10 ggtggagcatcatcaagattcaca 33
>51344_ppd-miR172b:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 4 ggtggagcatcatcaggattcaca 27
||||||||||||||| ||||||||
Sbjct: 130 ggtggagcatcatcaagattcaca 107
>51343_ppd-miR172a:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 4 ggtggagcatcatcaggattcaca 27
||||||||||||||| ||||||||
Sbjct: 8 ggtggagcatcatcaagattcaca 31
>48693_mes-miR172:pmrd
Length = 146
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 tatgagaatcctgatgatgctgca 107
|||||||||| |||||||||||||
Sbjct: 112 tatgagaatcttgatgatgctgca 135
>46987_ath-miR172d:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 tgagaatcctgatgatgctgcagc 109
|||||||| |||||||||||||||
Sbjct: 86 tgagaatcttgatgatgctgcagc 109
