miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48729_mtr-miR390:pmrd
Length = 90
Score = 137 bits (69), Expect = 2e-33
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccatagaatgtcttcnnnnnnnggttccattttattgattg 65
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatagaatgtcttctttttttggttccattttattgattg 60
Query: 66 atcttctcttgcgctatccatcctgagttt 95
||||||||||||||||||||||||||||||
Sbjct: 61 atcttctcttgcgctatccatcctgagttt 90
>54848_vvi-miR390:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 9 ctgttaagctcaggagggatagcgccat 36
>51718_ptc-miR390c:pmrd
Length = 123
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
>51716_ptc-miR390a:pmrd
Length = 119
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
>48500_ghr-miR390c:pmrd
Length = 114
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagtttcat 109
>48499_ghr-miR390b:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 13 ctgttaagctcaggagggatagcgccat 40
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 94 gcgctatccatcctgagtttcat 116
>48498_ghr-miR390a:pmrd
Length = 124
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccat 37
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtttcat 113
>51719_ptc-miR390d:pmrd
Length = 106
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagttt 95
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>51717_ptc-miR390b:pmrd
Length = 106
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttcat 101
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||
Sbjct: 1 gttaagctcaggagggatagcgcc 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagttt 95
||||||||||||||||||||
Sbjct: 72 gcgctatccatcctgagttt 91
>48372_bna-miR390c:pmrd
Length = 128
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccat 45
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcatgg 100
||||||||||||||||||| |||||
Sbjct: 85 gcgctatccatcctgagttccatgg 109
>48371_bna-miR390b:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccat 40
>48370_bna-miR390a:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccat 55
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccat 40
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttcat 91
>46995_ath-miR390a:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccat 40
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttcat 91
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagttt 95
||||||||||||||||||||
Sbjct: 52 gcgctatccatcctgagttt 71
>46996_ath-miR390b:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 agctcaggagggatagcgcc 26
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 agctcaggagggatagcgcc 26
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
