miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48731_mtr-miR393b:pmrd
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatcccaaatctaattaagtccctagctacttaattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggcatccaaagggatcgcattgatcccaaatctaattaagtccctagctacttaattaa 60
Query: 61 caacttaatttccttaatatctcataatatttgggatcatgctatccctttggattcat 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caacttaatttccttaatatctcataatatttgggatcatgctatccctttggattcat 119
>48576_gma-miR393:pmrd
Length = 120
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatcccaaatc 33
|||||||||||||||||||||||||||||||||
Sbjct: 6 aggcatccaaagggatcgcattgatcccaaatc 38
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 88 tatttgggatcatgctatccctttggatt 116
|||||||||||||||||||||||||||||
Sbjct: 84 tatttgggatcatgctatccctttggatt 112
>54850_vvi-miR393b:pmrd
Length = 83
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatcccaaa 31
|||||||||||||||||||||||||||||||
Sbjct: 6 aggcatccaaagggatcgcattgatcccaaa 36
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 ggatcatgctatccctttggattc 117
||||||||||||||||||||||||
Sbjct: 51 ggatcatgctatccctttggattc 74
>52949_ptc-miRf11127-akr:pmrd
Length = 93
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatcccaa 30
||||||||||||||||||||||||||||||
Sbjct: 9 aggcatccaaagggatcgcattgatcccaa 38
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 89 atttgggatcatgctatccctttggattc 117
|||| ||||||||||||||||||||||||
Sbjct: 55 attttggatcatgctatccctttggattc 83
>52948_ptc-miRf11126-akr:pmrd
Length = 93
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatcccaa 30
||||||||||||||||||||||||||||||
Sbjct: 9 aggcatccaaagggatcgcattgatcccaa 38
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 89 atttgggatcatgctatccctttggattc 117
|||| ||||||||||||||||||||||||
Sbjct: 55 attttggatcatgctatccctttggattc 83
>51950_ptc-miRf10128-akr:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatcccaa 30
||||||||||||||||||||||||||||||
Sbjct: 12 aggcatccaaagggatcgcattgatcccaa 41
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 89 atttgggatcatgctatccctttggattc 117
|||| ||||||||||||||||||||||||
Sbjct: 58 attttggatcatgctatccctttggattc 86
>51720_ptc-miR393a:pmrd
Length = 85
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatcccaa 30
||||||||||||||||||||||||||||||
Sbjct: 6 aggcatccaaagggatcgcattgatcccaa 35
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 89 atttgggatcatgctatccctttggattc 117
|||| ||||||||||||||||||||||||
Sbjct: 52 attttggatcatgctatccctttggattc 80
>53841_ptc-miRf12019-akr:pmrd
Length = 98
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatccc 28
||||||||||||||||||||||||||||
Sbjct: 12 aggcatccaaagggatcgcattgatccc 39
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 89 atttgggatcatgctatccctttggattc 117
|||| ||||||||||||||||||||||||
Sbjct: 57 attttggatcatgctatccctttggattc 85
>53840_ptc-miRf12018-akr:pmrd
Length = 92
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatccc 28
||||||||||||||||||||||||||||
Sbjct: 9 aggcatccaaagggatcgcattgatccc 36
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 89 atttgggatcatgctatccctttggattc 117
|||| ||||||||||||||||||||||||
Sbjct: 54 attttggatcatgctatccctttggattc 82
>52374_ptc-miRf10552-akr:pmrd
Length = 92
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatccc 28
||||||||||||||||||||||||||||
Sbjct: 9 aggcatccaaagggatcgcattgatccc 36
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 89 atttgggatcatgctatccctttggattc 117
|||| ||||||||||||||||||||||||
Sbjct: 54 attttggatcatgctatccctttggattc 82
>51972_ptc-miRf10150-akr:pmrd
Length = 98
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1 aggcatccaaagggatcgcattgatccc 28
||||||||||||||||||||||||||||
Sbjct: 87 aggcatccaaagggatcgcattgatccc 60
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 89 atttgggatcatgctatccctttggattc 117
|||| ||||||||||||||||||||||||
Sbjct: 42 attttggatcatgctatccctttggattc 14
>51721_ptc-miR393b:pmrd
Length = 84
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatccc 28
||||||||||||||||||||||||||||
Sbjct: 6 aggcatccaaagggatcgcattgatccc 33
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 89 atttgggatcatgctatccctttggattc 117
|||| ||||||||||||||||||||||||
Sbjct: 51 attttggatcatgctatccctttggattc 79
>48730_mtr-miR393:pmrd
Length = 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 aggcatccaaagggatcgcattgatcc 27
|||||||||||||||||||||||||||
Sbjct: 16 aggcatccaaagggatcgcattgatcc 42
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 91 ttgggatcatgctatccctttggatt 116
|||||||||||| |||||||||||||
Sbjct: 93 ttgggatcatgccatccctttggatt 118
>54470_sbi-miR393:pmrd
Length = 139
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gcatccaaagggatcgcattgatcc 27
|||||||||||||||||||||||||
Sbjct: 18 gcatccaaagggatcgcattgatcc 42
>48917_osa-miR393:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gcatccaaagggatcgcattgatcc 27
|||||||||||||||||||||||||
Sbjct: 8 gcatccaaagggatcgcattgatcc 32
>54849_vvi-miR393a:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatccca 29
||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatccca 34
>47287_ath-miRf10187-akr:pmrd
Length = 162
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 atccaaagggatcgcattgatcc 27
|||||||||||||||||||||||
Sbjct: 11 atccaaagggatcgcattgatcc 33
>47214_ath-miRf10114-akr:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 atccaaagggatcgcattgatcc 27
|||||||||||||||||||||||
Sbjct: 9 atccaaagggatcgcattgatcc 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ggatcatgctatccctttggattcat 119
||||||||||||| ||||||||||||
Sbjct: 102 ggatcatgctatctctttggattcat 127
>46999_ath-miR393b:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 atccaaagggatcgcattgatcc 27
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>46998_ath-miR393a:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 atccaaagggatcgcattgatcc 27
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ggatcatgctatccctttggattcat 119
||||||||||||| ||||||||||||
Sbjct: 103 ggatcatgctatctctttggattcat 128
>55062_zma-miR393f:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatcc 27
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55057_zma-miR393a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatcc 27
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>48373_bna-miR393:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatcc 27
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55063_zma-miR393g:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>55061_zma-miR393e:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 87 tccaaagggatcgcattgatc 67
>55060_zma-miR393d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 89 tccaaagggatcgcattgatc 69
>55059_zma-miR393c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55058_zma-miR393b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55056_zma-miR393:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>51723_ptc-miR393d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>51722_ptc-miR393c:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48919_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48918_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48501_ghr-miR393:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 tccaaagggatcgcattgatc 26
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
