miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48733_mtr-miR395b:pmrd
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 tacttgttgattttctcttggagttcctctgaatgcttcaaacatgagacaatcttgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttgttgattttctcttggagttcctctgaatgcttcaaacatgagacaatcttgata 60
Query: 61 gaaattatggatagttcttgttcaatgaagtatttgggggaactcttggaattgaatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaaattatggatagttcttgttcaatgaagtatttgggggaactcttggaattgaatcaa 120
Query: 121 cata 124
||||
Sbjct: 121 cata 124
>48741_mtr-miR395j:pmrd
Length = 76
Score = 89.7 bits (45), Expect = 5e-19
Identities = 74/85 (87%), Gaps = 9/85 (10%)
Strand = Plus / Plus
Query: 21 gagttcctctgaatgcttcaaacatgagacaatcttgatagaaattatggatagttcttg 80
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 gagttcctctgaatgcttcaaacatgagacaatcta---------tatggatagttcttg 51
Query: 81 ttcaatgaagtatttgggggaactc 105
||||||||||| |||||||||||||
Sbjct: 52 ttcaatgaagtgtttgggggaactc 76
>48740_mtr-miR395i:pmrd
Length = 76
Score = 73.8 bits (37), Expect = 3e-14
Identities = 72/85 (84%), Gaps = 9/85 (10%)
Strand = Plus / Plus
Query: 21 gagttcctctgaatgcttcaaacatgagacaatcttgatagaaattatggatagttcttg 80
||||||||||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct: 1 gagttcctctgaatgcttcaatcatgagacaatcta---------tatgaatagttcttg 51
Query: 81 ttcaatgaagtatttgggggaactc 105
||||||||||| |||||||||||||
Sbjct: 52 ttcaatgaagtgtttgggggaactc 76
>48732_mtr-miR395a:pmrd
Length = 135
Score = 56.0 bits (28), Expect = 6e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 70 gatagttcttgttcaatgaagtatttgggggaactcttgg 109
|||||||||| |||||||||| |||||||||||||||||
Sbjct: 81 gatagttcttcatcaatgaagtgtttgggggaactcttgg 120
>48744_mtr-miR395m:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 70 gatagttcttgttcaatgaagtatttgggggaactc 105
|||||||||| || |||||||| |||||||||||||
Sbjct: 65 gatagttcttcttaaatgaagtgtttgggggaactc 100
>48736_mtr-miR395e:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 70 gatagttcttgttcaatgaagtatttgggggaactc 105
|||||||||| || |||||||| |||||||||||||
Sbjct: 65 gatagttcttcttaaatgaagtgtttgggggaactc 100
>48735_mtr-miR395d:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 71 atagttcttgttcaatgaagtatttgggggaactc 105
||||||||| || |||||||| |||||||||||||
Sbjct: 61 atagttcttcttaaatgaagtgtttgggggaactc 95
>54478_sbi-miR395f:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 85 atgaagtatttgggggaactcttgg 109
||||||| |||||||||||||||||
Sbjct: 83 atgaagtgtttgggggaactcttgg 107
>48745_mtr-miR395n:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 81 ttcaatgaagtatttgggggaactc 105
||||||||||| |||||||||||||
Sbjct: 77 ttcaatgaagtgtttgggggaactc 101
>48743_mtr-miR395l:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 81 ttcaatgaagtatttgggggaactc 105
||||||||||| |||||||||||||
Sbjct: 77 ttcaatgaagtgtttgggggaactc 101
>55067_zma-miR395b:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 tgaagtatttgggggaactcttgg 109
|||||| |||||||||||||||||
Sbjct: 76 tgaagtgtttgggggaactcttgg 99
>54476_sbi-miR395d:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 tgaagtatttgggggaactcttgg 109
|||||| |||||||||||||||||
Sbjct: 66 tgaagtgtttgggggaactcttgg 89
>48930_osa-miR395i:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 tgaagtatttgggggaactcttgg 109
|||||| |||||||||||||||||
Sbjct: 70 tgaagtgtttgggggaactcttgg 93
>48739_mtr-miR395h:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 81 ttcaatgaagtatttgggggaact 104
||||||||||| ||||||||||||
Sbjct: 77 ttcaatgaagtgtttgggggaact 100
