miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48748_mtr-miR396a:pmrd
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaacttctttcgtatcttaaatctgttttcaagattaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaacttctttcgtatcttaaatctgttttcaagattaaaa 60
Query: 61 gtcctagaagctcaagaaagctgtgggagaata 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 gtcctagaagctcaagaaagctgtgggagaata 93
>48579_gma-miR396b:pmrd
Length = 126
Score = 71.9 bits (36), Expect = 8e-14
Identities = 82/97 (84%), Gaps = 4/97 (4%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaacttctttcgtatcttaaatctgtt----ttcaagatt 56
||||||||||||||||||||||||||||| | |||||| |||| | | || ||||
Sbjct: 16 tgcttttccacagctttcttgaacttcttatgcatcttatatctctccacctccaggatt 75
Query: 57 aaaagtcctagaagctcaagaaagctgtgggagaata 93
||| |||||||||||||||||||||||||||||||
Sbjct: 76 ttaagccctagaagctcaagaaagctgtgggagaata 112
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 tgcttttccacagctttcttgaacttcttt 30
||||||||||||||||||||||||||||||
Sbjct: 139 tgcttttccacagctttcttgaacttcttt 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 67 gaagctcaagaaagctgtgggagaa 91
|||||||||||||||||||||||||
Sbjct: 29 gaagctcaagaaagctgtgggagaa 5
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 tgcttttccacagctttcttgaacttcttt 30
||||||||||||||||||||||||||||||
Sbjct: 139 tgcttttccacagctttcttgaacttcttt 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 67 gaagctcaagaaagctgtgggagaa 91
|||||||||||||||||||||||||
Sbjct: 29 gaagctcaagaaagctgtgggagaa 5
>51738_ptc-miR396e:pmrd
Length = 145
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaacttcttt 30
||||||||||||||||||||||||||||||
Sbjct: 6 tgcttttccacagctttcttgaacttcttt 35
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 67 gaagctcaagaaagctgtgggagaa 91
|||||||||||||||||||||||||
Sbjct: 116 gaagctcaagaaagctgtgggagaa 140
>54869_vvi-miR396b:pmrd
Length = 108
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaacttctt 29
|||||||||||||||||||||||||||||
Sbjct: 9 tgcttttccacagctttcttgaacttctt 37
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 8 ccacagctttcttgaacttc 27
||||||||||||||||||||
Sbjct: 95 ccacagctttcttgaacttc 76
>48580_gma-miR396c:pmrd
Length = 117
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaacttctt 29
|||||||||||||||||||||||||||||
Sbjct: 16 tgcttttccacagctttcttgaacttctt 44
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 tgcttttccacagctttcttgaacttc 27
|||||||||||||||||||||||||||
Sbjct: 147 tgcttttccacagctttcttgaacttc 121
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 67 gaagctcaagaaagctgtgggagaa 91
||||||||||||||| |||||||||
Sbjct: 28 gaagctcaagaaagccgtgggagaa 4
>51737_ptc-miR396d:pmrd
Length = 154
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaacttc 27
|||||||||||||||||||||||||||
Sbjct: 6 tgcttttccacagctttcttgaacttc 32
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 67 gaagctcaagaaagctgtgggagaa 91
||||||||||||||| |||||||||
Sbjct: 125 gaagctcaagaaagccgtgggagaa 149
>54868_vvi-miR396a:pmrd
Length = 116
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaacttcttt 30
||||||||||||||||||||||||| ||||
Sbjct: 9 tgcttttccacagctttcttgaactacttt 38
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tagaagctcaagaaagctgtgggag 89
|||||||||||||||||||||||||
Sbjct: 82 tagaagctcaagaaagctgtgggag 106
>55078_zma-miR396g:pmrd
Length = 117
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tttccacagctttcttgaacttctt 29
|||||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaacttctt 26
>55077_zma-miR396f:pmrd
Length = 166
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tttccacagctttcttgaacttctt 29
|||||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaacttctt 26
>54487_sbi-miR396c:pmrd
Length = 162
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttccacagctttcttgaacttct 28
||||||||||||||||||||||||
Sbjct: 20 tttccacagctttcttgaacttct 43
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 4 ttttccacagctttcttgaacttc 27
||||||||||||||||||||||||
Sbjct: 95 ttttccacagctttcttgaacttc 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaacttctt 29
|||| |||||| |||||||||||||||||
Sbjct: 5 tgctattccacggctttcttgaacttctt 33
>51736_ptc-miR396c:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 ttttccacagctttcttgaacttc 27
||||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaacttc 32
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 tgcttttccacagctttcttgaacttctt 29
|||| |||||| |||||||||||||||||
Sbjct: 99 tgctattccacggctttcttgaacttctt 71
>51564_pta-miR396:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 cttttccacagctttcttgaactt 26
||||||||||||||||||||||||
Sbjct: 14 cttttccacagctttcttgaactt 37
>48947_osa-miR396c:pmrd
Length = 141
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttccacagctttcttgaacttct 28
||||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaacttct 33
>47009_ath-miR396b:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 cttttccacagctttcttgaactt 26
||||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaactt 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 gaagctcaagaaagctgtggga 88
||||||||||||||||||||||
Sbjct: 104 gaagctcaagaaagctgtggga 125
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaactt 26
||||||||||| ||||||||||||||
Sbjct: 3 tgcttttccacggctttcttgaactt 28
>51740_ptc-miR396g:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaactt 26
||||||||||| ||||||||||||||
Sbjct: 6 tgcttttccacggctttcttgaactt 31
>48374_bna-miR396a:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaactt 26
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46888_aqc-miR396b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaactt 26
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54584_smo-miR396:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgcttttccacagctttcttgaac 24
||||||||||| ||||||||||||
Sbjct: 6 tgcttttccacggctttcttgaac 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 8 ccacagctttcttgaacttc 27
||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6 ttccacagctttcttgaact 25
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
