miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48750_mtr-miR399a:pmrd
          Length = 134

 Score =  266 bits (134), Expect = 4e-72
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaagttgcagttgaattacagggtgagttctccattggcaggtagctagtcactatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccaagttgcagttgaattacagggtgagttctccattggcaggtagctagtcactatat 60

                                                                       
Query: 61  gatatgcattgcaatcatttcttagtgtgcaatctgccaaaggagatttgcccagcgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gatatgcattgcaatcatttcttagtgtgcaatctgccaaaggagatttgcccagcgatt 120

                         
Query: 121 ctcctgcaactcta 134
           ||||||||||||||
Sbjct: 121 ctcctgcaactcta 134




>48754_mtr-miR399e:pmrd
          Length = 134

 Score =  226 bits (114), Expect = 3e-60
 Identities = 129/134 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaagttgcagttgaattacagggtgagttctccattggcaggtagctagtcactatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1   tccaagttgcagttgaattacagggtgagttctccattggcaggtagctagccactatat 60

                                                                       
Query: 61  gatatgcattgcaatcatttcttagtgtgcaatctgccaaaggagatttgcccagcgatt 120
           ||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61  gatatgcattgcaatcatcacttagtgtgtaatctgccaaaggagatttgcccagcgatt 120

                         
Query: 121 ctcctgcaactcta 134
           ||| ||||||||||
Sbjct: 121 ctcatgcaactcta 134




>48970_osa-miR399g:pmrd
          Length = 119

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 92  atctgccaaaggagatttgcccagcgattc 121
           ||||||||||||||||||||||||||||||
Sbjct: 86  atctgccaaaggagatttgcccagcgattc 115




>54881_vvi-miR399e:pmrd
          Length = 112

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 83  tagtgtgcaatctgccaaaggagatttgcccagcgattct 122
           ||||||||  ||||||||||||||||||||| || |||||
Sbjct: 70  tagtgtgccctctgccaaaggagatttgcccggcaattct 109




>54494_sbi-miR399f:pmrd
          Length = 120

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 93  tctgccaaaggagatttgcccagc 116
           ||||||||||||||||||||||||
Sbjct: 79  tctgccaaaggagatttgcccagc 102




>48969_osa-miR399f:pmrd
          Length = 117

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 93  tctgccaaaggagatttgcccagc 116
           ||||||||||||||||||||||||
Sbjct: 85  tctgccaaaggagatttgcccagc 108




>54493_sbi-miR399e:pmrd
          Length = 126

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  ctgccaaaggagatttgcccagc 116
           |||||||||||||||||||||||
Sbjct: 86  ctgccaaaggagatttgcccagc 108




>49373_osa-miRf10158-akr:pmrd
          Length = 112

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  ctgccaaaggagatttgcccagc 116
           |||||||||||||||||||||||
Sbjct: 84  ctgccaaaggagatttgcccagc 106




>48968_osa-miR399e:pmrd
          Length = 118

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  ctgccaaaggagatttgcccagc 116
           |||||||||||||||||||||||
Sbjct: 87  ctgccaaaggagatttgcccagc 109




>47015_ath-miR399a:pmrd
          Length = 123

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 92  atctgccaaaggagatttgccc 113
           ||||||||||||||||||||||
Sbjct: 90  atctgccaaaggagatttgccc 111




>48377_bna-miR399:pmrd
          Length = 102

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 93  tctgccaaaggagatttgccc 113
           |||||||||||||||||||||
Sbjct: 79  tctgccaaaggagatttgccc 99




>47535_ath-miRf10435-akr:pmrd
          Length = 92

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 93  tctgccaaaggagatttgccc 113
           |||||||||||||||||||||
Sbjct: 64  tctgccaaaggagatttgccc 84




>47020_ath-miR399f:pmrd
          Length = 118

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 93  tctgccaaaggagatttgccc 113
           |||||||||||||||||||||
Sbjct: 86  tctgccaaaggagatttgccc 106




>47018_ath-miR399d:pmrd
          Length = 100

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 93  tctgccaaaggagatttgccc 113
           |||||||||||||||||||||
Sbjct: 68  tctgccaaaggagatttgccc 88




>55093_zma-miR399c:pmrd
          Length = 207

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 95  tgccaaaggagatttgcccagcgattct 122
           |||||||||||| |||||| ||||||||
Sbjct: 168 tgccaaaggagaattgccctgcgattct 195




>54883_vvi-miR399g:pmrd
          Length = 113

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  ctgccaaaggagatttgccc 113
           ||||||||||||||||||||
Sbjct: 82  ctgccaaaggagatttgccc 101




>54491_sbi-miR399c:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 95  tgccaaaggagatttgcccagcgattct 122
           |||||||||||| |||||| ||||||||
Sbjct: 91  tgccaaaggagaattgccctgcgattct 118




>51749_ptc-miR399c:pmrd
          Length = 126

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 95  tgccaaaggagatttgcccagcgattct 122
           ||||||||||||||||||| || |||||
Sbjct: 97  tgccaaaggagatttgcccggcaattct 124




>51748_ptc-miR399b:pmrd
          Length = 126

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 95  tgccaaaggagatttgcccagcgattct 122
           ||||||||||||||||||| || |||||
Sbjct: 97  tgccaaaggagatttgcccggcaattct 124




>51747_ptc-miR399a:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  ctgccaaaggagatttgccc 113
           ||||||||||||||||||||
Sbjct: 90  ctgccaaaggagatttgccc 109




>47019_ath-miR399e:pmrd
          Length = 109

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  tctgccaaaggagatttgcc 112
           ||||||||||||||||||||
Sbjct: 77  tctgccaaaggagatttgcc 96