miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48750_mtr-miR399a:pmrd
Length = 134
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1 tccaagttgcagttgaattacagggtgagttctccattggcaggtagctagtcactatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccaagttgcagttgaattacagggtgagttctccattggcaggtagctagtcactatat 60
Query: 61 gatatgcattgcaatcatttcttagtgtgcaatctgccaaaggagatttgcccagcgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatatgcattgcaatcatttcttagtgtgcaatctgccaaaggagatttgcccagcgatt 120
Query: 121 ctcctgcaactcta 134
||||||||||||||
Sbjct: 121 ctcctgcaactcta 134
>48754_mtr-miR399e:pmrd
Length = 134
Score = 226 bits (114), Expect = 3e-60
Identities = 129/134 (96%)
Strand = Plus / Plus
Query: 1 tccaagttgcagttgaattacagggtgagttctccattggcaggtagctagtcactatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tccaagttgcagttgaattacagggtgagttctccattggcaggtagctagccactatat 60
Query: 61 gatatgcattgcaatcatttcttagtgtgcaatctgccaaaggagatttgcccagcgatt 120
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 gatatgcattgcaatcatcacttagtgtgtaatctgccaaaggagatttgcccagcgatt 120
Query: 121 ctcctgcaactcta 134
||| ||||||||||
Sbjct: 121 ctcatgcaactcta 134
>48970_osa-miR399g:pmrd
Length = 119
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 92 atctgccaaaggagatttgcccagcgattc 121
||||||||||||||||||||||||||||||
Sbjct: 86 atctgccaaaggagatttgcccagcgattc 115
>54881_vvi-miR399e:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 83 tagtgtgcaatctgccaaaggagatttgcccagcgattct 122
|||||||| ||||||||||||||||||||| || |||||
Sbjct: 70 tagtgtgccctctgccaaaggagatttgcccggcaattct 109
>54494_sbi-miR399f:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagc 116
||||||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgcccagc 102
>48969_osa-miR399f:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagc 116
||||||||||||||||||||||||
Sbjct: 85 tctgccaaaggagatttgcccagc 108
>54493_sbi-miR399e:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagc 116
|||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagc 108
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagc 116
|||||||||||||||||||||||
Sbjct: 84 ctgccaaaggagatttgcccagc 106
>48968_osa-miR399e:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagc 116
|||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagc 109
>47015_ath-miR399a:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 atctgccaaaggagatttgccc 113
||||||||||||||||||||||
Sbjct: 90 atctgccaaaggagatttgccc 111
>48377_bna-miR399:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgccc 99
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 64 tctgccaaaggagatttgccc 84
>47020_ath-miR399f:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 86 tctgccaaaggagatttgccc 106
>47018_ath-miR399d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 68 tctgccaaaggagatttgccc 88
>55093_zma-miR399c:pmrd
Length = 207
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccagcgattct 122
|||||||||||| |||||| ||||||||
Sbjct: 168 tgccaaaggagaattgccctgcgattct 195
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgccc 113
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>54491_sbi-miR399c:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccagcgattct 122
|||||||||||| |||||| ||||||||
Sbjct: 91 tgccaaaggagaattgccctgcgattct 118
>51749_ptc-miR399c:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccagcgattct 122
||||||||||||||||||| || |||||
Sbjct: 97 tgccaaaggagatttgcccggcaattct 124
>51748_ptc-miR399b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccagcgattct 122
||||||||||||||||||| || |||||
Sbjct: 97 tgccaaaggagatttgcccggcaattct 124
>51747_ptc-miR399a:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgccc 113
||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccc 109
>47019_ath-miR399e:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcc 112
||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgcc 96