miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48752_mtr-miR399c:pmrd
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 gttctgctgttgaggaatgatagggaaaatctcttttggcagagaggagtaaaaatctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttctgctgttgaggaatgatagggaaaatctcttttggcagagaggagtaaaaatctta 60
Query: 61 aacaggaatgtttctggtttgccaaaggagatttgccctgccatttttgacagctattg 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacaggaatgtttctggtttgccaaaggagatttgccctgccatttttgacagctattg 119
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 71 tttctggtttgccaaaggagatttgccctgccatt 105
|||||| |||||||||||||| |||||||||||||
Sbjct: 36 tttctgttttgccaaaggagaattgccctgccatt 2
>51752_ptc-miR399f:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 71 tttctggtttgccaaaggagatttgccctgccatt 105
|||||| |||||||||||||| |||||||||||||
Sbjct: 63 tttctgttttgccaaaggagaattgccctgccatt 97
>48758_mtr-miR399j:pmrd
Length = 84
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 21 tagggaaaatctcttttggcagagaggagta 51
||||| |||||||||||||||||||||||||
Sbjct: 1 taggggaaatctcttttggcagagaggagta 31
>54884_vvi-miR399h:pmrd
Length = 90
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 72 ttctggtttgccaaaggagatttgccctgccatt 105
||||| |||||||||||||| |||||||||||||
Sbjct: 52 ttctgttttgccaaaggagaattgccctgccatt 85
>55091_zma-miR399a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 79 ttgccaaaggagatttgccctgccatt 105
||||||||||||| |||||||||||||
Sbjct: 83 ttgccaaaggagaattgccctgccatt 109
>48513_ghr-miR399b:pmrd
Length = 77
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tttgccaaaggagatttgccctg 100
|||||||||||||||||||||||
Sbjct: 55 tttgccaaaggagatttgccctg 77
>54496_sbi-miR399h:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgccctgccatt 105
|||||||||||| |||||||||||||
Sbjct: 93 tgccaaaggagaattgccctgccatt 118
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 80 tgccaaaggagatttgccctgccatt 105
|||||||||||| |||||||||||||
Sbjct: 28 tgccaaaggagaattgccctgccatt 3
>51753_ptc-miR399g:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgccctgccatt 105
|||||||||||| |||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccatt 90
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgccctgccatt 105
|||||||||||| |||||||||||||
Sbjct: 79 tgccaaaggagaattgccctgccatt 104
>48965_osa-miR399b:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgccctgccatt 105
|||||||||||| |||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccatt 92
>47015_ath-miR399a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgccctg 100
|||||||||||||||||||||
Sbjct: 93 tgccaaaggagatttgccctg 113
>54498_sbi-miR399j:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 79 ttgccaaaggagatttgccctgcc 102
||||||||||||| ||||||||||
Sbjct: 70 ttgccaaaggagaattgccctgcc 93
>48964_osa-miR399a:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 80 tgccaaaggagatttgccctgccatttt 107
|||||||||||| ||||||||| |||||
Sbjct: 119 tgccaaaggagaattgccctgcgatttt 146
