miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48753_mtr-miR399d:pmrd
          Length = 129

 Score =  256 bits (129), Expect = 3e-69
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagtaagcaaatcagtcatagggcatgtctctattggcaggtgatatggtgatatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taaagtaagcaaatcagtcatagggcatgtctctattggcaggtgatatggtgatatttc 60

                                                                       
Query: 61  atttgactttaaggctctaaaaattcacttgccaaaggagagctgccctacgagtgttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttgactttaaggctctaaaaattcacttgccaaaggagagctgccctacgagtgttta 120

                    
Query: 121 gcttaaaca 129
           |||||||||
Sbjct: 121 gcttaaaca 129




>48751_mtr-miR399b:pmrd
          Length = 112

 Score =  151 bits (76), Expect = 1e-37
 Identities = 103/112 (91%)
 Strand = Plus / Plus

                                                                       
Query: 18  tcatagggcatgtctctattggcaggtgatatggtgatatttcatttgactttaaggctc 77
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||  ||||| 
Sbjct: 1   tcatagggcatgtctctattggtaggtgatatggtgatatttcatttgaattagaggctt 60

                                                               
Query: 78  taaaaattcacttgccaaaggagagctgccctacgagtgtttagcttaaaca 129
            | |||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 61  cagaaattcacttgccaaaggagagctgccctgtgagtgtttagcttaaaca 112




>47017_ath-miR399c:pmrd
          Length = 114

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 85  tcacttgccaaaggagagctgccct 109
           |||||||||||||||||| ||||||
Sbjct: 79  tcacttgccaaaggagagttgccct 103




>55100_zma-miR399j:pmrd
          Length = 91

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  tgccaaaggagagctgccct 109
           ||||||||||||||||||||
Sbjct: 71  tgccaaaggagagctgccct 90




>55094_zma-miR399d:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  tgccaaaggagagctgccct 109
           ||||||||||||||||||||
Sbjct: 86  tgccaaaggagagctgccct 105




>54490_sbi-miR399b:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  tgccaaaggagagctgccct 109
           ||||||||||||||||||||
Sbjct: 84  tgccaaaggagagctgccct 103




>51755_ptc-miR399i:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 88  cttgccaaaggagagctgccctacgagtgttt 119
           ||||||||||||||| ||||||| || |||||
Sbjct: 77  cttgccaaaggagagttgccctatgactgttt 108




>48972_osa-miR399i:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 90  tgccaaaggagagctgccct 109
           ||||||||||||||||||||
Sbjct: 86  tgccaaaggagagctgccct 105