miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48750_mtr-miR399a:pmrd
          Length = 134

 Score =  182 bits (92), Expect = 3e-47
 Identities = 102/104 (98%), Gaps = 1/104 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 18  ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaa-tc 76

                                                       
Query: 61  atctcttagtgtgcaatctgccaaaggagatttgcccagcgatt 104
           || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  atttcttagtgtgcaatctgccaaaggagatttgcccagcgatt 120




>48754_mtr-miR399e:pmrd
          Length = 134

 Score =  167 bits (84), Expect = 2e-42
 Identities = 100/104 (96%), Gaps = 1/104 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaattc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 18  ttacagggtgagttctccattggcaggtagctagccactatatgatatgcattgcaa-tc 76

                                                       
Query: 61  atctcttagtgtgcaatctgccaaaggagatttgcccagcgatt 104
           ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 77  atcacttagtgtgtaatctgccaaaggagatttgcccagcgatt 120




>48970_osa-miR399g:pmrd
          Length = 119

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 76  atctgccaaaggagatttgcccagcgatt 104
           |||||||||||||||||||||||||||||
Sbjct: 86  atctgccaaaggagatttgcccagcgatt 114




>54494_sbi-miR399f:pmrd
          Length = 120

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  tctgccaaaggagatttgcccagc 100
           ||||||||||||||||||||||||
Sbjct: 79  tctgccaaaggagatttgcccagc 102




>48969_osa-miR399f:pmrd
          Length = 117

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  tctgccaaaggagatttgcccagc 100
           ||||||||||||||||||||||||
Sbjct: 85  tctgccaaaggagatttgcccagc 108




>54881_vvi-miR399e:pmrd
          Length = 112

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 67  tagtgtgcaatctgccaaaggagatttgccc 97
           ||||||||  |||||||||||||||||||||
Sbjct: 70  tagtgtgccctctgccaaaggagatttgccc 100




>54493_sbi-miR399e:pmrd
          Length = 126

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  ctgccaaaggagatttgcccagc 100
           |||||||||||||||||||||||
Sbjct: 86  ctgccaaaggagatttgcccagc 108




>49373_osa-miRf10158-akr:pmrd
          Length = 112

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  ctgccaaaggagatttgcccagc 100
           |||||||||||||||||||||||
Sbjct: 84  ctgccaaaggagatttgcccagc 106




>48968_osa-miR399e:pmrd
          Length = 118

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  ctgccaaaggagatttgcccagc 100
           |||||||||||||||||||||||
Sbjct: 87  ctgccaaaggagatttgcccagc 109




>47015_ath-miR399a:pmrd
          Length = 123

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 76  atctgccaaaggagatttgccc 97
           ||||||||||||||||||||||
Sbjct: 90  atctgccaaaggagatttgccc 111




>48377_bna-miR399:pmrd
          Length = 102

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 77 tctgccaaaggagatttgccc 97
          |||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgccc 99




>47535_ath-miRf10435-akr:pmrd
          Length = 92

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 77 tctgccaaaggagatttgccc 97
          |||||||||||||||||||||
Sbjct: 64 tctgccaaaggagatttgccc 84




>47020_ath-miR399f:pmrd
          Length = 118

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 77  tctgccaaaggagatttgccc 97
           |||||||||||||||||||||
Sbjct: 86  tctgccaaaggagatttgccc 106




>47018_ath-miR399d:pmrd
          Length = 100

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 77 tctgccaaaggagatttgccc 97
          |||||||||||||||||||||
Sbjct: 68 tctgccaaaggagatttgccc 88




>54883_vvi-miR399g:pmrd
          Length = 113

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctgccaaaggagatttgccc 97
           ||||||||||||||||||||
Sbjct: 82  ctgccaaaggagatttgccc 101




>51747_ptc-miR399a:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctgccaaaggagatttgccc 97
           ||||||||||||||||||||
Sbjct: 90  ctgccaaaggagatttgccc 109




>47019_ath-miR399e:pmrd
          Length = 109

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 tctgccaaaggagatttgcc 96
          ||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgcc 96