miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48750_mtr-miR399a:pmrd
Length = 134
Score = 182 bits (92), Expect = 3e-47
Identities = 102/104 (98%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 1 ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 18 ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaa-tc 76
Query: 61 atctcttagtgtgcaatctgccaaaggagatttgcccagcgatt 104
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 atttcttagtgtgcaatctgccaaaggagatttgcccagcgatt 120
>48754_mtr-miR399e:pmrd
Length = 134
Score = 167 bits (84), Expect = 2e-42
Identities = 100/104 (96%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 1 ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaattc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 18 ttacagggtgagttctccattggcaggtagctagccactatatgatatgcattgcaa-tc 76
Query: 61 atctcttagtgtgcaatctgccaaaggagatttgcccagcgatt 104
||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 77 atcacttagtgtgtaatctgccaaaggagatttgcccagcgatt 120
>48970_osa-miR399g:pmrd
Length = 119
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 76 atctgccaaaggagatttgcccagcgatt 104
|||||||||||||||||||||||||||||
Sbjct: 86 atctgccaaaggagatttgcccagcgatt 114
>54494_sbi-miR399f:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgcccagc 100
||||||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgcccagc 102
>48969_osa-miR399f:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgcccagc 100
||||||||||||||||||||||||
Sbjct: 85 tctgccaaaggagatttgcccagc 108
>54881_vvi-miR399e:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 tagtgtgcaatctgccaaaggagatttgccc 97
|||||||| |||||||||||||||||||||
Sbjct: 70 tagtgtgccctctgccaaaggagatttgccc 100
>54493_sbi-miR399e:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagc 100
|||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagc 108
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagc 100
|||||||||||||||||||||||
Sbjct: 84 ctgccaaaggagatttgcccagc 106
>48968_osa-miR399e:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgcccagc 100
|||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagc 109
>47015_ath-miR399a:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 atctgccaaaggagatttgccc 97
||||||||||||||||||||||
Sbjct: 90 atctgccaaaggagatttgccc 111
>48377_bna-miR399:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgccc 97
|||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgccc 99
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgccc 97
|||||||||||||||||||||
Sbjct: 64 tctgccaaaggagatttgccc 84
>47020_ath-miR399f:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgccc 97
|||||||||||||||||||||
Sbjct: 86 tctgccaaaggagatttgccc 106
>47018_ath-miR399d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgccc 97
|||||||||||||||||||||
Sbjct: 68 tctgccaaaggagatttgccc 88
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgccc 97
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>51747_ptc-miR399a:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 ctgccaaaggagatttgccc 97
||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccc 109
>47019_ath-miR399e:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tctgccaaaggagatttgcc 96
||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgcc 96