miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48754_mtr-miR399e:pmrd
          Length = 134

 Score = 61.9 bits (31), Expect = 8e-11
 Identities = 56/62 (90%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                       
Query: 39  tatgatatgcattgcaaccatactctttgagtgtgtaacctgccaaaggagatttgccca 98
           ||||||||||||||||| ||| | |||  ||||||||| |||||||||||||||||||||
Sbjct: 58  tatgatatgcattgcaatcat-cactt--agtgtgtaatctgccaaaggagatttgccca 114

             
Query: 99  gc 100
           ||
Sbjct: 115 gc 116




>48750_mtr-miR399a:pmrd
          Length = 134

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 55/62 (88%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                       
Query: 39  tatgatatgcattgcaaccatactctttgagtgtgtaacctgccaaaggagatttgccca 98
           ||||||||||||||||| |||  ||||  |||||| || |||||||||||||||||||||
Sbjct: 58  tatgatatgcattgcaatcatt-tctt--agtgtgcaatctgccaaaggagatttgccca 114

             
Query: 99  gc 100
           ||
Sbjct: 115 gc 116




>54494_sbi-miR399f:pmrd
          Length = 120

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||||||||||
Sbjct: 80  ctgccaaaggagatttgcccagcaat 105




>54493_sbi-miR399e:pmrd
          Length = 126

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||||||||||
Sbjct: 86  ctgccaaaggagatttgcccagcaat 111




>49373_osa-miRf10158-akr:pmrd
          Length = 112

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||||||||||
Sbjct: 84  ctgccaaaggagatttgcccagcaat 109




>48969_osa-miR399f:pmrd
          Length = 117

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||||||||||
Sbjct: 86  ctgccaaaggagatttgcccagcaat 111




>48968_osa-miR399e:pmrd
          Length = 118

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||||||||||
Sbjct: 87  ctgccaaaggagatttgcccagcaat 112




>54881_vvi-miR399e:pmrd
          Length = 112

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 81  ctgccaaaggagatttgcccggcaatt 107




>51747_ptc-miR399a:pmrd
          Length = 120

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 90  ctgccaaaggagatttgccccgcaatt 116




>48970_osa-miR399g:pmrd
          Length = 119

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  ctgccaaaggagatttgcccagc 100
           |||||||||||||||||||||||
Sbjct: 88  ctgccaaaggagatttgcccagc 110




>47535_ath-miRf10435-akr:pmrd
          Length = 92

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 65  ctgccaaaggagatttgccccgcaatt 91




>47018_ath-miR399d:pmrd
          Length = 100

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 69  ctgccaaaggagatttgccccgcaatt 95




>51749_ptc-miR399c:pmrd
          Length = 126

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 79  tgccaaaggagatttgcccagcaatt 104
           ||||||||||||||||||| ||||||
Sbjct: 97  tgccaaaggagatttgcccggcaatt 122




>51748_ptc-miR399b:pmrd
          Length = 126

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 79  tgccaaaggagatttgcccagcaatt 104
           ||||||||||||||||||| ||||||
Sbjct: 97  tgccaaaggagatttgcccggcaatt 122




>48971_osa-miR399h:pmrd
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||| ||||||||||||
Sbjct: 68  ctgccaaaggagacttgcccagcaat 93




>52630_ptc-miRf10808-akr:pmrd
          Length = 110

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 79  tgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||| |||||
Sbjct: 25  tgccaaaggagatttgcccggcaat 1




>51890_ptc-miRf10068-akr:pmrd
          Length = 110

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 79  tgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||| |||||
Sbjct: 25  tgccaaaggagatttgcccggcaat 1




>54883_vvi-miR399g:pmrd
          Length = 113

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctgccaaaggagatttgccc 97
           ||||||||||||||||||||
Sbjct: 82  ctgccaaaggagatttgccc 101




>48377_bna-miR399:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 78 ctgccaaaggagatttgccc 97
          ||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgccc 99




>47020_ath-miR399f:pmrd
          Length = 118

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctgccaaaggagatttgccc 97
           ||||||||||||||||||||
Sbjct: 87  ctgccaaaggagatttgccc 106




>47015_ath-miR399a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctgccaaaggagatttgccc 97
           ||||||||||||||||||||
Sbjct: 92  ctgccaaaggagatttgccc 111