miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48757_mtr-miR399i:pmrd
Length = 83
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 4 ctgggcaatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaactc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgggcaatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaactc 60
Query: 64 accgccaaagaagatttgccccg 86
|||||||||||||||||||||||
Sbjct: 61 accgccaaagaagatttgccccg 83
>48755_mtr-miR399f:pmrd
Length = 81
Score = 129 bits (65), Expect = 4e-31
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 6 gggcaatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaactcac 65
|||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1 gggcaatgacttttttggcagtagttcacttgatctttcagatgatgcaaacaaactcac 60
Query: 66 cgccaaagaagatttgccccg 86
||||||||||||||||||||
Sbjct: 61 tgccaaagaagatttgccccg 81
>51751_ptc-miR399e:pmrd
Length = 114
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
||||| |||||||||||||||||||||||||
Sbjct: 80 ctcactgccaaagaagatttgccccgcaatt 110
>51750_ptc-miR399d:pmrd
Length = 114
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 ctcaccgccaaagaagatttgccccgcaatt 91
||||| |||||||||||||||||||||||||
Sbjct: 80 ctcactgccaaagaagatttgccccgcaatt 110
>51747_ptc-miR399a:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 67 gccaaagaagatttgccccgcaatt 91
||||||| |||||||||||||||||
Sbjct: 92 gccaaaggagatttgccccgcaatt 116
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 67 gccaaagaagatttgccccgcaatt 91
||||||| |||||||||||||||||
Sbjct: 67 gccaaaggagatttgccccgcaatt 91
>47018_ath-miR399d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 67 gccaaagaagatttgccccgcaatt 91
||||||| |||||||||||||||||
Sbjct: 71 gccaaaggagatttgccccgcaatt 95
