miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48753_mtr-miR399d:pmrd
          Length = 129

 Score =  109 bits (55), Expect = 3e-25
 Identities = 88/100 (88%), Gaps = 8/100 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcatagggcatgtctctattggcaggtg--------atatttcatttgacttagaggc 52
           ||||||||||||||||||||||||||||||        ||||||||||||||||  ||||
Sbjct: 16  agtcatagggcatgtctctattggcaggtgatatggtgatatttcatttgactttaaggc 75

                                                   
Query: 53  tctagaaattcacttgccaaaggagagctgccctgcgagt 92
           |||| ||||||||||||||||||||||||||||| |||||
Sbjct: 76  tctaaaaattcacttgccaaaggagagctgccctacgagt 115




>48751_mtr-miR399b:pmrd
          Length = 112

 Score = 99.6 bits (50), Expect = 3e-22
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                      
Query: 27 ggtgatatttcatttgacttagaggctctagaaattcacttgccaaaggagagctgccct 86
          ||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||
Sbjct: 33 ggtgatatttcatttgaattagaggcttcagaaattcacttgccaaaggagagctgccct 92

                
Query: 87 gcgagt 92
          | ||||
Sbjct: 93 gtgagt 98




>55094_zma-miR399d:pmrd
          Length = 125

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 67  tgccaaaggagagctgccctgc 88
           ||||||||||||||||||||||
Sbjct: 86  tgccaaaggagagctgccctgc 107




>54490_sbi-miR399b:pmrd
          Length = 123

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 67  tgccaaaggagagctgccctgc 88
           ||||||||||||||||||||||
Sbjct: 84  tgccaaaggagagctgccctgc 105




>48972_osa-miR399i:pmrd
          Length = 116

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 67  tgccaaaggagagctgccctgc 88
           ||||||||||||||||||||||
Sbjct: 86  tgccaaaggagagctgccctgc 107




>47017_ath-miR399c:pmrd
          Length = 114

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 62  tcacttgccaaaggagagctgccctg 87
           |||||||||||||||||| |||||||
Sbjct: 79  tcacttgccaaaggagagttgccctg 104




>55100_zma-miR399j:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 67 tgccaaaggagagctgccctg 87
          |||||||||||||||||||||
Sbjct: 71 tgccaaaggagagctgccctg 91




>54878_vvi-miR399b:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 64  acttgccaaaggagagctgccctg 87
           |||||||||||||||| |||||||
Sbjct: 84  acttgccaaaggagagttgccctg 107




>54492_sbi-miR399d:pmrd
          Length = 205

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 67  tgccaaaggagagctgccctgcga 90
           ||||||||||||| ||||||||||
Sbjct: 166 tgccaaaggagagttgccctgcga 189




>48967_osa-miR399d:pmrd
          Length = 286

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 67  tgccaaaggagagctgccctgcga 90
           ||||||||||||| ||||||||||
Sbjct: 256 tgccaaaggagagttgccctgcga 279