miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51650_ptc-miR168a:pmrd
          Length = 160

 Score =  159 bits (80), Expect = 8e-40
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60

                              
Query: 61 tcgacatgactggttgttgt 80
          ||||||||||||||||||||
Sbjct: 61 tcgacatgactggttgttgt 80



 Score = 85.7 bits (43), Expect = 9e-18
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 118 gaatagcgaattggatcccgccttgcatcaactgaatcggagg 160
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gaatagcgaattggatcccgccttgcatcaactgaatcggagg 160




>54375_pts-miR168b:pmrd
          Length = 140

 Score =  119 bits (60), Expect = 7e-28
 Identities = 66/68 (97%)
 Strand = Plus / Plus

                                                                      
Query: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctcgacatgac 70
          ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagctggctggacatgac 60

                  
Query: 71 tggttgtt 78
          ||||||||
Sbjct: 61 tggttgtt 68



 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 118 gaatagcgaattggatcccgccttgcatcaactga 152
           |||||||||||||||||||||||||||||||||||
Sbjct: 106 gaatagcgaattggatcccgccttgcatcaactga 140




>51651_ptc-miR168b:pmrd
          Length = 136

 Score =  113 bits (57), Expect = 4e-26
 Identities = 60/61 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
          ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60

           
Query: 61 t 61
          |
Sbjct: 61 t 61



 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 125 gaattggatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggag 135




>54374_pts-miR168a:pmrd
          Length = 118

 Score = 85.7 bits (43), Expect = 9e-18
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                             
Query: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 61
          |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggct 51



 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 125 gaattggatcccgccttgcatcaactga 152
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118




>54366_ptr-miR168:pmrd
          Length = 118

 Score = 85.7 bits (43), Expect = 9e-18
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                             
Query: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 61
          |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggct 51



 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 125 gaattggatcccgccttgcatcaactga 152
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118




>48560_gma-miR168:pmrd
          Length = 125

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 124 cgaattggatcccgccttgcatcaactgaatcggagg 160
           |||||||||||||||||||||||||||||||||||||
Sbjct: 78  cgaattggatcccgccttgcatcaactgaatcggagg 114



 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  ggtctctgattcgcttggtgcaggtcgggaac 32
          ||||||| ||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaac 40




>54388_rco-miR168:pmrd
          Length = 156

 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          ||||||| |||||||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaactgatt 45



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 125 gaattggatcccgccttgcatcaactgaatcg 156
           ||||||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcg 141




>46958_ath-miR168b:pmrd
          Length = 124

 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37
          |||||| ||||||||||||||||||||||||||||||
Sbjct: 9  ggtctcggattcgcttggtgcaggtcgggaactgatt 45




>47339_ath-miRf10239-akr:pmrd
          Length = 129

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
           ||||||||||||||||||||||||||||||||
Sbjct: 91  attggatcccgccttgcatcaactgaatcgga 122



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  gattcgcttggtgcaggtcgggaactgattcggc 41
          |||||||||||||||||||||||||  |||||||
Sbjct: 10 gattcgcttggtgcaggtcgggaaccaattcggc 43




>46957_ath-miR168a:pmrd
          Length = 138

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
           ||||||||||||||||||||||||||||||||
Sbjct: 96  attggatcccgccttgcatcaactgaatcgga 127



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 8  gattcgcttggtgcaggtcgggaactgattcggc 41
          |||||||||||||||||||||||||  |||||||
Sbjct: 15 gattcgcttggtgcaggtcgggaaccaattcggc 48




>48349_bna-miR168:pmrd
          Length = 133

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 4  ctctgattcgcttggtgcaggtcgggaactgatt 37
          |||||| |||||||||||||||||||||||||||
Sbjct: 11 ctctgactcgcttggtgcaggtcgggaactgatt 44




>54802_vvi-miR168:pmrd
          Length = 132

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 131 gatcccgccttgcatcaactgaatcggag 159
           |||||||||||||||||||||||||||||
Sbjct: 99  gatcccgccttgcatcaactgaatcggag 127



 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  ggtctctgattcgcttggtgcaggtcgggaac 32
          ||||||| ||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32




>55000_zma-miR168b:pmrd
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||||||| ||||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcggag 92




>46959_ath-miR168m:pmrd
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 127 attggatcccgccttgcatcaactga 152
           ||||||||||||||||||||||||||
Sbjct: 79  attggatcccgccttgcatcaactga 104



 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 11 tcgcttggtgcaggtcgggaactgattcggc 41
          ||||||||||||||||||||||  |||||||
Sbjct: 1  tcgcttggtgcaggtcgggaaccaattcggc 31




>54546_sly-miR168:pmrd
          Length = 145

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 11 tcgcttggtgcaggtcgggaactgattcggcg 42
          |||||||||||||||||||| || ||||||||
Sbjct: 1  tcgcttggtgcaggtcgggacctcattcggcg 32




>48649_hte-miR168:pmrd
          Length = 140

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tcgcttggtgcaggtcgggaactg 34
          ||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactg 24




>54999_zma-miR168a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>54637_sof-miR168b:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcggag 91




>54636_sof-miR168a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>48873_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48872_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48871_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>54665_stu-miR168:pmrd
          Length = 133

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 128 ttggatcccgccttgcatcaactga 152
           |||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tcgcttggtgcaggtcggga 30
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20