miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51650_ptc-miR168a:pmrd
Length = 160
Score = 159 bits (80), Expect = 8e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 61 tcgacatgactggttgttgt 80
||||||||||||||||||||
Sbjct: 61 tcgacatgactggttgttgt 80
Score = 85.7 bits (43), Expect = 9e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 118 gaatagcgaattggatcccgccttgcatcaactgaatcggagg 160
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gaatagcgaattggatcccgccttgcatcaactgaatcggagg 160
>54375_pts-miR168b:pmrd
Length = 140
Score = 119 bits (60), Expect = 7e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctcgacatgac 70
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagctggctggacatgac 60
Query: 71 tggttgtt 78
||||||||
Sbjct: 61 tggttgtt 68
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 118 gaatagcgaattggatcccgccttgcatcaactga 152
|||||||||||||||||||||||||||||||||||
Sbjct: 106 gaatagcgaattggatcccgccttgcatcaactga 140
>51651_ptc-miR168b:pmrd
Length = 136
Score = 113 bits (57), Expect = 4e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggc 60
Query: 61 t 61
|
Sbjct: 61 t 61
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 125 gaattggatcccgccttgcatcaactgaatcggag 159
|||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggag 135
>54374_pts-miR168a:pmrd
Length = 118
Score = 85.7 bits (43), Expect = 9e-18
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 61
|||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggct 51
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 125 gaattggatcccgccttgcatcaactga 152
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
>54366_ptr-miR168:pmrd
Length = 118
Score = 85.7 bits (43), Expect = 9e-18
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 61
|||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggct 51
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 125 gaattggatcccgccttgcatcaactga 152
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
>48560_gma-miR168:pmrd
Length = 125
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 124 cgaattggatcccgccttgcatcaactgaatcggagg 160
|||||||||||||||||||||||||||||||||||||
Sbjct: 78 cgaattggatcccgccttgcatcaactgaatcggagg 114
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaac 32
||||||| ||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
>54388_rco-miR168:pmrd
Length = 156
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgatt 37
||||||| |||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaactgatt 45
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 125 gaattggatcccgccttgcatcaactgaatcg 156
||||||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcg 141
>46958_ath-miR168b:pmrd
Length = 124
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaactgatt 37
|||||| ||||||||||||||||||||||||||||||
Sbjct: 9 ggtctcggattcgcttggtgcaggtcgggaactgatt 45
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcgga 122
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 gattcgcttggtgcaggtcgggaactgattcggc 41
||||||||||||||||||||||||| |||||||
Sbjct: 10 gattcgcttggtgcaggtcgggaaccaattcggc 43
>46957_ath-miR168a:pmrd
Length = 138
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
||||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcgga 127
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 8 gattcgcttggtgcaggtcgggaactgattcggc 41
||||||||||||||||||||||||| |||||||
Sbjct: 15 gattcgcttggtgcaggtcgggaaccaattcggc 48
>48349_bna-miR168:pmrd
Length = 133
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 4 ctctgattcgcttggtgcaggtcgggaactgatt 37
|||||| |||||||||||||||||||||||||||
Sbjct: 11 ctctgactcgcttggtgcaggtcgggaactgatt 44
>54802_vvi-miR168:pmrd
Length = 132
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 131 gatcccgccttgcatcaactgaatcggag 159
|||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggag 127
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ggtctctgattcgcttggtgcaggtcgggaac 32
||||||| ||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
>55000_zma-miR168b:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>46959_ath-miR168m:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 127 attggatcccgccttgcatcaactga 152
||||||||||||||||||||||||||
Sbjct: 79 attggatcccgccttgcatcaactga 104
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgattcggc 41
|||||||||||||||||||||| |||||||
Sbjct: 1 tcgcttggtgcaggtcgggaaccaattcggc 31
>54546_sly-miR168:pmrd
Length = 145
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactgattcggcg 42
|||||||||||||||||||| || ||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacctcattcggcg 32
>48649_hte-miR168:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcgggaactg 34
||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactg 24
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54637_sof-miR168b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>54636_sof-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>48873_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 128 ttggatcccgccttgcatcaactga 152
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tcgcttggtgcaggtcggga 30
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20