miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>53746_ptc-miRf11924-akr:pmrd
          Length = 138

 Score =  212 bits (107), Expect = 4e-56
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15  cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 74

                                                          
Query: 61  tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 121




>51654_ptc-miR169ab:pmrd
          Length = 107

 Score =  212 bits (107), Expect = 4e-56
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60

                                                          
Query: 61  tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107




>53831_ptc-miRf12009-akr:pmrd
          Length = 138

 Score =  204 bits (103), Expect = 9e-54
 Identities = 106/107 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15  cttgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccaatatattac 74

                                                          
Query: 61  tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 121




>51657_ptc-miR169ae:pmrd
          Length = 107

 Score =  204 bits (103), Expect = 9e-54
 Identities = 106/107 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1   cttgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccaatatattac 60

                                                          
Query: 61  tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgggcaccttccatttggttttgggcaagcaccttggctagctgaca 107




>51658_ptc-miR169af:pmrd
          Length = 107

 Score =  192 bits (97), Expect = 4e-50
 Identities = 103/105 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgtttggtagccaaggacgacttgcccaccaccatctcagttgggtccaatatattactg 62
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 3   tgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccagtatattactg 62

                                                        
Query: 63  ggcaccttccatttggttttgggcaagcaccttggctagctgaca 107
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ggcaccttccatttggttttgggcaagcaccttggctagctgaca 107




>51680_ptc-miR169w:pmrd
          Length = 109

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 3  tgtttggtagccaaggacgacttgcccac 31
          ||||||||||||||||| |||||||||||
Sbjct: 3  tgtttggtagccaaggatgacttgcccac 31




>51679_ptc-miR169v:pmrd
          Length = 110

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 3  tgtttggtagccaaggacgacttgcccac 31
          ||||||||||||||||| |||||||||||
Sbjct: 3  tgtttggtagccaaggatgacttgcccac 31




>51656_ptc-miR169ad:pmrd
          Length = 101

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 3  tgtttggtagccaaggacgacttgcccac 31
          |||| ||||||||||||||||||||||||
Sbjct: 3  tgttcggtagccaaggacgacttgcccac 31




>52726_ptc-miRf10904-akr:pmrd
          Length = 132

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  cttgtttggtagccaaggacgacttgcc 28
          ||||||||||||||||||| ||||||||
Sbjct: 6  cttgtttggtagccaaggatgacttgcc 33




>51670_ptc-miR169m:pmrd
          Length = 119

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  cttgtttggtagccaaggacgacttgcc 28
          ||||||||||||||||||| ||||||||
Sbjct: 2  cttgtttggtagccaaggatgacttgcc 29




>51668_ptc-miR169k:pmrd
          Length = 203

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  cttgtttggtagccaaggacgacttgcc 28
          ||||||||||||||||||| ||||||||
Sbjct: 2  cttgtttggtagccaaggatgacttgcc 29




>51666_ptc-miR169i:pmrd
          Length = 123

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  cttgtttggtagccaaggacgacttgcc 28
          ||||||||||||||||||| ||||||||
Sbjct: 2  cttgtttggtagccaaggatgacttgcc 29




>48487_ghb-miR169a:pmrd
          Length = 189

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 1  cttgtttggtagccaaggacgacttgcc 28
          ||||||||||||||||||| ||||||||
Sbjct: 41 cttgtttggtagccaaggatgacttgcc 68




>51906_ptc-miRf10084-akr:pmrd
          Length = 103

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  gtagccaaggacgacttgcccac 31
          |||||||||||||||||||||||
Sbjct: 5  gtagccaaggacgacttgcccac 27




>51655_ptc-miR169ac:pmrd
          Length = 107

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  gtagccaaggacgacttgcccac 31
          |||||||||||||||||||||||
Sbjct: 9  gtagccaaggacgacttgcccac 31




>51678_ptc-miR169u:pmrd
          Length = 122

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 8  ggtagccaaggacgacttgcc 28
          |||||||||||||||||||||
Sbjct: 9  ggtagccaaggacgacttgcc 29




>51675_ptc-miR169r:pmrd
          Length = 119

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 4  gtttggtagccaaggacgacttgcc 28
          |||||||||||||||| ||||||||
Sbjct: 5  gtttggtagccaaggatgacttgcc 29




>54548_sly-miR169b:pmrd
          Length = 205

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 5   tttggtagccaaggacgacttgcc 28
           ||||||||||||||| ||||||||
Sbjct: 166 tttggtagccaaggatgacttgcc 189




>54440_sbi-miR169d:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 5  tttggtagccaaggacgacttgcc 28
          ||||||||||||||| ||||||||
Sbjct: 16 tttggtagccaaggatgacttgcc 39




>54439_sbi-miR169c:pmrd
          Length = 126

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 5  tttggtagccaaggacgacttgcc 28
          ||||||||||||||| ||||||||
Sbjct: 16 tttggtagccaaggatgacttgcc 39




>51674_ptc-miR169q:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 1  cttgtttggtagccaaggacgacttgcc 28
          |||||| | |||||||||||||||||||
Sbjct: 2  cttgttagttagccaaggacgacttgcc 29




>48355_bna-miR169f:pmrd
          Length = 201

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 5  tttggtagccaaggacgacttgcc 28
          ||||||||||||||| ||||||||
Sbjct: 26 tttggtagccaaggatgacttgcc 49




>48354_bna-miR169e:pmrd
          Length = 276

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 5   tttggtagccaaggacgacttgcc 28
           ||||||||||||||| ||||||||
Sbjct: 246 tttggtagccaaggatgacttgcc 269




>48353_bna-miR169d:pmrd
          Length = 220

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 5  tttggtagccaaggacgacttgcc 28
          ||||||||||||||| ||||||||
Sbjct: 35 tttggtagccaaggatgacttgcc 58




>48352_bna-miR169c:pmrd
          Length = 176

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 5  tttggtagccaaggacgacttgcc 28
          ||||||||||||||| ||||||||
Sbjct: 21 tttggtagccaaggatgacttgcc 44




>47103_ath-miRf10003-akr:pmrd
          Length = 141

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 1   cttgtttggtagccaaggacgacttgcc 28
           ||||| ||||||||||||| ||||||||
Sbjct: 130 cttgtgtggtagccaaggatgacttgcc 103




>46973_ath-miR169m:pmrd
          Length = 212

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 5  tttggtagccaaggacgacttgcc 28
          ||||||||||||||| ||||||||
Sbjct: 37 tttggtagccaaggatgacttgcc 60




>46971_ath-miR169k:pmrd
          Length = 213

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 5  tttggtagccaaggacgacttgcc 28
          ||||||||||||||| ||||||||
Sbjct: 38 tttggtagccaaggatgacttgcc 61




>46969_ath-miR169i:pmrd
          Length = 206

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 5  tttggtagccaaggacgacttgcc 28
          ||||||||||||||| ||||||||
Sbjct: 35 tttggtagccaaggatgacttgcc 58




>46968_ath-miR169h:pmrd
          Length = 190

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 1  cttgtttggtagccaaggacgacttgcc 28
          ||||| ||||||||||||| ||||||||
Sbjct: 37 cttgtgtggtagccaaggatgacttgcc 64