miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55090_zma-miR398c:pmrd
Length = 108
Score = 69.9 bits (35), Expect = 4e-13
Identities = 55/60 (91%), Gaps = 5/60 (8%)
Strand = Plus / Plus
Query: 1 gggggcggactgggaacacatgggaatgagagatgag---attgctcggtcgtgctggcc 57
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 2 gggggcggactgggaacacatgggaat--gagatgagatcattgctcggtcgtgctggcc 59
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 tgcatgtgttctcaggtcgcccccg 108
|||||||||||||||||||||||||
Sbjct: 84 tgcatgtgttctcaggtcgcccccg 108
>55089_zma-miR398b:pmrd
Length = 142
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 84 tgcatgtgttctcaggtcgcccccgc 109
||||||||||||||||||||||||||
Sbjct: 117 tgcatgtgttctcaggtcgcccccgc 142
Score = 44.1 bits (22), Expect = 2e-05
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 1 gggggcggactgggaacacatgggaatga-gagatgagattgctcg 45
||||||| |||| ||||||||| |||| | ||||||||||||||||
Sbjct: 3 gggggcgaactgagaacacatgagaataatgagatgagattgctcg 48
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 86 catgtgttctcaggtcgcccccgc 109
||||||||||||| ||||||||||
Sbjct: 24 catgtgttctcagttcgcccccgc 1
>55088_zma-miR398a:pmrd
Length = 142
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 84 tgcatgtgttctcaggtcgcccccgc 109
||||||||||||||||||||||||||
Sbjct: 26 tgcatgtgttctcaggtcgcccccgc 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 1 gggggcggactgggaacacatgggaatga-gagatgagattgctcg 45
||||||| |||| ||||||||| |||| | ||||||||||||||||
Sbjct: 140 gggggcgaactgagaacacatgagaataatgagatgagattgctcg 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 catgtgttctcaggtcgcccccgc 109
||||||||||||| ||||||||||
Sbjct: 119 catgtgttctcagttcgcccccgc 142
>54744_tae-miR2025:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 catgtgttctcaggtcgcccccgc 109
||||||||||||||||||||||||
Sbjct: 69 catgtgttctcaggtcgcccccgc 92
>54876_vvi-miR398c:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 catgtgttctcaggtcgcccc 106
|||||||||||||||||||||
Sbjct: 56 catgtgttctcaggtcgcccc 76
>54875_vvi-miR398b:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 catgtgttctcaggtcgcccc 106
|||||||||||||||||||||
Sbjct: 56 catgtgttctcaggtcgcccc 76
>51746_ptc-miR398c:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 catgtgttctcaggtcgcccc 106
|||||||||||||||||||||
Sbjct: 66 catgtgttctcaggtcgcccc 86
>51745_ptc-miR398b:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 catgtgttctcaggtcgcccc 106
|||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccc 74
>48749_mtr-miR398a:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 catgtgttctcaggtcgcccc 106
|||||||||||||||||||||
Sbjct: 55 catgtgttctcaggtcgcccc 75
>46890_aqc-miR398b:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 catgtgttctcaggtcgcccc 106
|||||||||||||||||||||
Sbjct: 70 catgtgttctcaggtcgcccc 90
