miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54493_sbi-miR399e:pmrd
Length = 126
Score = 250 bits (126), Expect = 2e-67
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1 acatgcggggccatgcattaccgggtgggtctcctctggcagtaacttggctggtcgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acatgcggggccatgcattaccgggtgggtctcctctggcagtaacttggctggtcgcct 60
Query: 61 ggtccatgatacctgcgtgcagacactgccaaaggagatttgcccagcaatgcagttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtccatgatacctgcgtgcagacactgccaaaggagatttgcccagcaatgcagttttg 120
Query: 121 agtccc 126
||||||
Sbjct: 121 agtccc 126
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaatgca 114
|||||||||||||||||||||||||||||
Sbjct: 84 ctgccaaaggagatttgcccagcaatgca 112
>48968_osa-miR399e:pmrd
Length = 118
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaatgca 114
|||||||||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagcaatgca 115
>48971_osa-miR399h:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 84 cactgccaaaggagatttgcccagcaatgcag 115
||||||||||||||| ||||||||||||||||
Sbjct: 66 cactgccaaaggagacttgcccagcaatgcag 97
>54494_sbi-miR399f:pmrd
Length = 120
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
||||||||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgcccagcaat 105
>48969_osa-miR399f:pmrd
Length = 117
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
||||||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>48970_osa-miR399g:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagc 108
|||||||||||||||||||||||
Sbjct: 88 ctgccaaaggagatttgcccagc 110
>48754_mtr-miR399e:pmrd
Length = 134
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagc 108
|||||||||||||||||||||||
Sbjct: 94 ctgccaaaggagatttgcccagc 116
>48750_mtr-miR399a:pmrd
Length = 134
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagc 108
|||||||||||||||||||||||
Sbjct: 94 ctgccaaaggagatttgcccagc 116
>54883_vvi-miR399g:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 cactgccaaaggagatttgccc 105
||||||||||||||||||||||
Sbjct: 80 cactgccaaaggagatttgccc 101
>54881_vvi-miR399e:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 81 ctgccaaaggagatttgcccggcaat 106
>51747_ptc-miR399a:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 90 ctgccaaaggagatttgccccgcaat 115
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 65 ctgccaaaggagatttgccccgcaat 90
>47018_ath-miR399d:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaat 111
|||||||||||||||||||| |||||
Sbjct: 69 ctgccaaaggagatttgccccgcaat 94
>52630_ptc-miRf10808-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 87 tgccaaaggagatttgcccagcaat 111
||||||||||||||||||| |||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 87 tgccaaaggagatttgcccagcaat 111
||||||||||||||||||| |||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
>51749_ptc-miR399c:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 87 tgccaaaggagatttgcccagcaat 111
||||||||||||||||||| |||||
Sbjct: 97 tgccaaaggagatttgcccggcaat 121
>51748_ptc-miR399b:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 87 tgccaaaggagatttgcccagcaat 111
||||||||||||||||||| |||||
Sbjct: 97 tgccaaaggagatttgcccggcaat 121
>53709_ptc-miRf11887-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 86 ctgccaaaggagatttgcccagcaatgc 113
||||||||||| |||||| |||||||||
Sbjct: 33 ctgccaaaggaaatttgctcagcaatgc 6
>51757_ptc-miR399k:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 86 ctgccaaaggagatttgcccagcaatgc 113
||||||||||| |||||| |||||||||
Sbjct: 31 ctgccaaaggaaatttgctcagcaatgc 4
>51751_ptc-miR399e:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 84 cactgccaaaggagatttgcccagcaat 111
||||||||||| |||||||||| |||||
Sbjct: 82 cactgccaaagaagatttgccccgcaat 109
>51750_ptc-miR399d:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 84 cactgccaaaggagatttgcccagcaat 111
||||||||||| |||||||||| |||||
Sbjct: 82 cactgccaaagaagatttgccccgcaat 109
>48377_bna-miR399:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgccc 105
||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgccc 99
>47020_ath-miR399f:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgccc 105
||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgccc 106
>47019_ath-miR399e:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgcccagcaatgc 113
||||||||||||||||||| |||||||
Sbjct: 78 ctgccaaaggagatttgcctcgcaatgc 105
>47015_ath-miR399a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 ctgccaaaggagatttgccc 105
||||||||||||||||||||
Sbjct: 92 ctgccaaaggagatttgccc 111
