miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54519_sbi-miR437w:pmrd
Length = 173
Score = 283 bits (143), Expect = 2e-77
Identities = 163/173 (94%)
Strand = Plus / Plus
Query: 1 taaatctctctaatatttaccaagtttatagaaaaatgcatcaacatttccaacatcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaatctctctaatatttaccaagtttatagaaaaatgcatcaacatttccaacatcaaa 60
Query: 61 ttagtatcattaaattctccgtgaaatatattcatagtgcatttacttgaacttgtagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttagtatcattaaattctccgtgaaatatattcatagtgcatttacttgaacttgtagat 120
Query: 121 tttaatagnnnnnnnnnnctaaaaacttggtgaaagttagagaagtttgactt 173
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 tttaatagttttttttttctaaaaacttggtgaaagttagagaagtttgactt 173
>54504_sbi-miR437g:pmrd
Length = 176
Score = 83.8 bits (42), Expect = 4e-17
Identities = 87/101 (86%), Gaps = 2/101 (1%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattct 78
||||||||||||||||| ||||||||||| | |||||||||| |||| ||| |||||||
Sbjct: 152 accaagtttatagaaaattgcatcaacatctacaacatcaaactagtttcaccaaattct 93
Query: 79 ccgtgaaata--tattcatagtgcatttacttgaacttgta 117
| ||||||| | || |||||||||||| |||||||||||
Sbjct: 92 ctatgaaatatgtcttgatagtgcatttatttgaacttgta 52
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 144 aaacttggtcaaagttagagaagtttgactt 174
>54526_sbi-miR1435a:pmrd
Length = 287
Score = 69.9 bits (35), Expect = 6e-13
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattct 78
|||||||||| ||||| |||||||||||| | ||||||||| || || ||||||||| ||
Sbjct: 222 accaagtttacagaaagatgcatcaacatctacaacatcaagtttgtttcattaaatcct 163
Query: 79 ccgtgaaatat 89
|| ||||||||
Sbjct: 162 ccatgaaatat 152
>54517_sbi-miR437u:pmrd
Length = 164
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
|||||||||||||||||||||||||||||||
Sbjct: 134 aaacttggtgaaagttagagaagtttgactt 164
Score = 52.0 bits (26), Expect = 1e-07
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattct 78
||||||||||||||||||| | ||| || | ||||||||||||| ||||||||||||
Sbjct: 142 accaagtttatagaaaaatacgccaatatctatgacatcaaattagtttcattaaattct 83
Query: 79 cc 80
||
Sbjct: 82 cc 81
>54507_sbi-miR437k:pmrd
Length = 172
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 139 ctaaaaacttggtgaaagttagagaagtttgactt 173
||||||||||||| |||||||||||||||||||||
Sbjct: 136 ctaaaaacttggtcaaagttagagaagtttgactt 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 147 ttggtgaaagttagagaagtttgac 171
||||| |||||||||||||||||||
Sbjct: 27 ttggtcaaagttagagaagtttgac 3
>54511_sbi-miR437o:pmrd
Length = 175
Score = 60.0 bits (30), Expect = 6e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 24 gtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattctccgtg 83
|||| |||||||||||| || | | | ||||||||||||||| ||||||||||||| ||
Sbjct: 25 gtttttagaaaaatgcaccatcctctacaacatcaaattagtttcattaaattctctatg 84
Query: 84 aaatat 89
||||||
Sbjct: 85 aaatat 90
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 140 taaaaacttggtgaaagttagagaagtttgactt 173
||||||||| || |||||||||||||||||||||
Sbjct: 140 taaaaacttagtcaaagttagagaagtttgactt 173
>54518_sbi-miR437v:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 20 ccaagtttatagaaaaatgcatcaacatttccaacatcaaa 60
|||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 91 ccaagtttatagaaaaatgcatcaacatctacaatatcaaa 51
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
|||||||| |||||||||||||||||||||
Sbjct: 84 aaacttggacaaagttagagaagtttgactt 114
>54500_sbi-miR437b:pmrd
Length = 171
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaatta 63
|||||||||||||||||||||| |||||| | ||||||||||||
Sbjct: 149 accaagtttatagaaaaatgcaccaacatctgaaacatcaaatta 105
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 141 aaacttggtcaaagttagagaagtttgactt 171
>54502_sbi-miR437e:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 9e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 142 aaaacttggtgaaagttagagaagtttgactt 173
|||||||||| |||||||||||||||||||||
Sbjct: 70 aaaacttggtcaaagttagagaagtttgactt 101
>55112_zma-miR437f:pmrd
Length = 342
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 32 aaacttggtcaaagttagagaagtttgactt 2
>55107_zma-miR437a:pmrd
Length = 342
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 311 aaacttggtcaaagttagagaagtttgactt 341
>54651_sof-miR437:pmrd
Length = 149
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 139 ctaaaaacttggtgaaagttagagaagtttgactt 173
||||||||||| | |||||||||||||||||||||
Sbjct: 114 ctaaaaacttgatcaaagttagagaagtttgactt 148
Score = 50.1 bits (25), Expect = 6e-07
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 21 caagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattctcc 80
|||||||||||||||||||| ||| || | || |||||| |||| |||||||||||||
Sbjct: 26 caagtttatagaaaaatgcaccaaaatctagaatatcaaactagttccattaaattctcc 85
Query: 81 gtgaa 85
||||
Sbjct: 86 atgaa 90
>54516_sbi-miR437t:pmrd
Length = 170
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 140 aaacttggtcaaagttagagaagtttgactt 170
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgca 40
||||||||||||||||||||||
Sbjct: 148 accaagtttatagaaaaatgca 127
>54512_sbi-miR437p:pmrd
Length = 188
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 156 aaacttggtcaaagttagagaagtttgactt 186
>54510_sbi-miR437n:pmrd
Length = 182
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 150 aaacttggttaaagttagagaagtttgactt 180
>54508_sbi-miR437l:pmrd
Length = 170
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 139 ctaaaaacttggtgaaagttagagaagtttgactt 173
|||||||||||| |||||||||||||||||||||
Sbjct: 136 ctaaaaacttggccaaagttagagaagtttgactt 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 19 accaagtttatagaaaaatgcatcaaca 46
||||| |||||||||||||||| |||||
Sbjct: 21 accaaatttatagaaaaatgcaccaaca 48
>54503_sbi-miR437f:pmrd
Length = 174
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 142 aaacttggtcaaagttagagaagtttgactt 172
Score = 46.1 bits (23), Expect = 9e-06
Identities = 49/57 (85%), Gaps = 3/57 (5%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaat 75
||||||||||||||||| |||| ||| || ||||| ||||||||| |||||||||
Sbjct: 150 accaagtttatagaaaagtgcaccaagat---caacaacaaattagtttcattaaat 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 153 aaagttagagaagtttgact 172
||||||||||||||||||||
Sbjct: 20 aaagttagagaagtttgact 1
>54501_sbi-miR437d:pmrd
Length = 136
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 104 aaacttggttaaagttagagaagtttgactt 134
Score = 52.0 bits (26), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattag 64
||||||||||||| |||||||| ||| |||| |||||||| |||||
Sbjct: 112 accaagtttataggaaaatgcaccaatatttacaacatcacattag 67
>48988_osa-miR437:pmrd
Length = 213
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 145 aaacttggtcaaagttagagaagtttgactt 175
>48987_osa-miR437:pmrd
Length = 213
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 145 aaacttggtcaaagttagagaagtttgactt 175
>48986_osa-miR437:pmrd
Length = 213
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||||||||||||||||||||
Sbjct: 145 aaacttggtcaaagttagagaagtttgactt 175
>55108_zma-miR437b:pmrd
Length = 168
Score = 52.0 bits (26), Expect = 1e-07
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattct 78
||||||||||||||||| |||||||||||| | |||||| |||||| | |||| |||||
Sbjct: 24 accaagtttatagaaaac-gcatcaacatttacgacatcagattagtttaattagattct 82
Query: 79 cc 80
||
Sbjct: 83 cc 84
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||| | |||||||||||||||||||||
Sbjct: 137 aaacttgttcaaagttagagaagtttgactt 167
>54506_sbi-miR437j:pmrd
Length = 172
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 143 aaacttggtgaaagttagagaagtttgac 171
||||||||| |||||||||||||||||||
Sbjct: 29 aaacttggtcaaagttagagaagtttgac 1
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 141 aaaaacttggtgaaagttagagaagtttgactt 173
|||||| |||| |||||||||||||||||||||
Sbjct: 140 aaaaacatggtcaaagttagagaagtttgactt 172
>55109_zma-miR437c:pmrd
Length = 177
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 141 aaaaacttggtgaaagttagagaagtttgac 171
|||| |||||| |||||||||||||||||||
Sbjct: 147 aaaagcttggtcaaagttagagaagtttgac 177
>54514_sbi-miR437r:pmrd
Length = 180
Score = 46.1 bits (23), Expect = 9e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagt 65
||||||| |||||||||||| | || |||| |||||||||||||||
Sbjct: 22 accaagtctatagaaaaatgtactaatatttacaacatcaaattagt 68
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
|||||||| |||||||||||||||||||||
Sbjct: 148 aaacttggccaaagttagagaagtttgactt 178
>54513_sbi-miR437q:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 147 ttggtgaaagttagagaagtttgactt 173
||||| |||||||||||||||||||||
Sbjct: 132 ttggtaaaagttagagaagtttgactt 158
>54505_sbi-miR437i:pmrd
Length = 170
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
|||||| || |||||||||||||||||||||
Sbjct: 140 aaactttgtcaaagttagagaagtttgactt 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 143 aaacttggtgaaagttagagaagtttgac 171
||||||||| ||||||| |||||||||||
Sbjct: 29 aaacttggtcaaagttaaagaagtttgac 1
>51322_pci-miR437:pmrd
Length = 166
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 143 aaacttggtgaaagttagagaagtttgactt 173
||||||||| |||| ||||||||||||||||
Sbjct: 71 aaacttggtcaaagctagagaagtttgactt 41
>54509_sbi-miR437m:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/37 (91%), Gaps = 2/37 (5%)
Strand = Plus / Plus
Query: 139 ctaaaaacttggtgaaa--gttagagaagtttgactt 173
||||||||||||| ||| ||||||||||||||||||
Sbjct: 136 ctaaaaacttggtcaaaaagttagagaagtttgactt 172
Score = 40.1 bits (20), Expect = 5e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 29 tagaaaaatgcatcaacatttccaacatcaaattagtatcattaaatt 76
|||||||||||| |||||| | || |||||||||| ||||||||||
Sbjct: 31 tagaaaaatgcaccaacatctagaatatcaaattagcttcattaaatt 78
>55113_zma-miR437g:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 148 tggtgaaagttagagaagtttgact 172
|||| ||||||||||||||||||||
Sbjct: 149 tggtaaaagttagagaagtttgact 173
>54515_sbi-miR437s:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 aaagttagagaagtttgactt 173
|||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgactt 174
>55110_zma-miR437d:pmrd
Length = 179
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 aagttagagaagtttgactt 173
||||||||||||||||||||
Sbjct: 156 aagttagagaagtttgactt 175
