miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54665_stu-miR168:pmrd
          Length = 133

 Score =  188 bits (95), Expect = 7e-49
 Identities = 127/136 (93%), Gaps = 5/136 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60

                                                                       
Query: 61  ccagcgtaccggtaaaaac--taattttttacatgttgtctgtggcgtagtttgggtccc 118
            |||| |||||||||||||  |  |||||||||   ||||||||||||||||||||||||
Sbjct: 61  gcagcttaccggtaaaaactttttttttttaca---tgtctgtggcgtagtttgggtccc 117

                           
Query: 119 gccttgcatcaactga 134
           ||||||||||||||||
Sbjct: 118 gccttgcatcaactga 133




>54546_sly-miR168:pmrd
          Length = 145

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tcgcttggtgcaggtcgggacct 23
          |||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggacct 23



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 109 tttgggtcccgccttgcatcaactga 134
           ||||||||| ||||||||||||||||
Sbjct: 120 tttgggtcctgccttgcatcaactga 145




>54388_rco-miR168:pmrd
          Length = 156

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 113 ttggatcccgccttgcatcaactga 137



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcggga 38




>54375_pts-miR168b:pmrd
          Length = 140

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 116 ttggatcccgccttgcatcaactga 140



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>54374_pts-miR168a:pmrd
          Length = 118

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 94  ttggatcccgccttgcatcaactga 118



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>54366_ptr-miR168:pmrd
          Length = 118

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 94  ttggatcccgccttgcatcaactga 118



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>51651_ptc-miR168b:pmrd
          Length = 136

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 104 ttggatcccgccttgcatcaactga 128



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcggga 30




>51650_ptc-miR168a:pmrd
          Length = 160

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 128 ttggatcccgccttgcatcaactga 152



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcggga 30




>48560_gma-miR168:pmrd
          Length = 125

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 82  ttggatcccgccttgcatcaactga 106



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcggga 38




>47339_ath-miRf10239-akr:pmrd
          Length = 129

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 92  ttggatcccgccttgcatcaactga 116



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 13 tcgcttggtgcaggtcggga 32




>46959_ath-miR168m:pmrd
          Length = 104

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 80  ttggatcccgccttgcatcaactga 104



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46957_ath-miR168a:pmrd
          Length = 138

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 ttgggtcccgccttgcatcaactga 134
           |||| ||||||||||||||||||||
Sbjct: 97  ttggatcccgccttgcatcaactga 121



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcggga 37




>54802_vvi-miR168:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcggga 30



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 tcccgccttgcatcaactga 134
           ||||||||||||||||||||
Sbjct: 101 tcccgccttgcatcaactga 120




>48649_hte-miR168:pmrd
          Length = 140

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>48349_bna-miR168:pmrd
          Length = 133

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcggga 37




>46958_ath-miR168b:pmrd
          Length = 124

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcggga 38