miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54656_stu-miR156a:pmrd
          Length = 86

 Score =  159 bits (80), Expect = 4e-40
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cagaagagagtgagcacacgcagtcgaattgtataaacatttatacaattgtcatttgcg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4  cagaagagagtgagcacacgcagtcgaattgtataaacatttatacaattgtcatttgcg 63

                              
Query: 61 tgtgctcacttctcattctg 80
          ||||||||||||||||||||
Sbjct: 64 tgtgctcacttctcattctg 83




>48491_ghr-miR156d:pmrd
          Length = 96

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  cagaagagagtgagcacacgcag 23
          |||||||||||||||||||||||
Sbjct: 12 cagaagagagtgagcacacgcag 34




>48425_cpt-miR156a:pmrd
          Length = 101

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  cagaagagagtgagcacacgcag 23
          |||||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacacgcag 36




>54923_zma-miR156n:pmrd
          Length = 84

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 4  cagaagagagtgagcacacg 23




>54919_zma-miR156i:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 16 cagaagagagtgagcacacg 35




>54918_zma-miR156h:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 23 cagaagagagtgagcacacg 42




>54915_zma-miR156e:pmrd
          Length = 126

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 23 cagaagagagtgagcacacg 42




>54914_zma-miR156d:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 19 cagaagagagtgagcacacg 38




>54769_vvi-miR156d:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                              
Query: 1  cagaagagagtgagcacacgcagtcgaattgtataa 36
          |||||||||||||||||| |||| | | ||||||||
Sbjct: 14 cagaagagagtgagcacatgcaggcaatttgtataa 49




>54569_smo-miR156a:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacacg 33




>54402_sbi-miR157:pmrd
          Length = 86

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 5  cagaagagagtgagcacacg 24




>54400_sbi-miR156h:pmrd
          Length = 94

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 5  cagaagagagtgagcacacg 24




>54399_sbi-miR156g:pmrd
          Length = 89

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 5  cagaagagagtgagcacacg 24




>54393_sbi-miR156a:pmrd
          Length = 84

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 4  cagaagagagtgagcacacg 23




>49326_osa-miRf10111-akr:pmrd
          Length = 100

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 10 cagaagagagtgagcacacg 29




>48813_osa-miR156m:pmrd
          Length = 86

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 4  cagaagagagtgagcacacg 23




>48810_osa-miR156j:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 45 cagaagagagtgagcacacg 64




>48809_osa-miR156i:pmrd
          Length = 90

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 6  cagaagagagtgagcacacg 25




>48808_osa-miR156h:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 12 cagaagagagtgagcacacg 31




>48805_osa-miR156e:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 13 cagaagagagtgagcacacg 32




>48804_osa-miR156d:pmrd
          Length = 129

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 23 cagaagagagtgagcacacg 42




>48801_osa-miR156a:pmrd
          Length = 100

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagagagtgagcacacg 20
          ||||||||||||||||||||
Sbjct: 10 cagaagagagtgagcacacg 29




>54924_zma-miR156o:pmrd
          Length = 99

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 4  cagaagagagtgagcacac 22




>54922_zma-miR156m:pmrd
          Length = 83

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 4  cagaagagagtgagcacac 22




>54913_zma-miR156c:pmrd
          Length = 139

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacac 42




>54912_zma-miR156b:pmrd
          Length = 124

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacac 42




>54911_zma-miR156a:pmrd
          Length = 152

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 21 cagaagagagtgagcacac 39




>54768_vvi-miR156c:pmrd
          Length = 104

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32




>54767_vvi-miR156b:pmrd
          Length = 102

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32




>54401_sbi-miR156i:pmrd
          Length = 121

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 6  cagaagagagtgagcacac 24




>54395_sbi-miR156c:pmrd
          Length = 95

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 4  cagaagagagtgagcacac 22




>54394_sbi-miR156b:pmrd
          Length = 84

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 4  cagaagagagtgagcacac 22




>53789_ptc-miRf11967-akr:pmrd
          Length = 87

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 6  cagaagagagtgagcacac 24




>52469_ptc-miRf10647-akr:pmrd
          Length = 104

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 90 cagaagagagtgagcacac 72




>51926_ptc-miRf10104-akr:pmrd
          Length = 96

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 11 cagaagagagtgagcacac 29




>51596_ptc-miR156f:pmrd
          Length = 101

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32




>51595_ptc-miR156e:pmrd
          Length = 100

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32




>51594_ptc-miR156d:pmrd
          Length = 101

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32




>51593_ptc-miR156c:pmrd
          Length = 100

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32



 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 62 gtgctcacttctcattctg 80
          |||||||||||||||||||
Sbjct: 71 gtgctcacttctcattctg 89




>51592_ptc-miR156b:pmrd
          Length = 101

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32




>51591_ptc-miR156a:pmrd
          Length = 101

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32




>51354_ppr-miR156:pmrd
          Length = 103

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 5  cagaagagagtgagcacac 23




>49442_osa-miRf10227-akr:pmrd
          Length = 93

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 86 cagaagagagtgagcacac 68




>48807_osa-miR156g:pmrd
          Length = 116

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 7  cagaagagagtgagcacac 25




>48806_osa-miR156f:pmrd
          Length = 186

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 7  cagaagagagtgagcacac 25




>48803_osa-miR156c:pmrd
          Length = 149

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 32 cagaagagagtgagcacac 50




>48802_osa-miR156b:pmrd
          Length = 176

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 46 cagaagagagtgagcacac 64




>48795_oru-miR156:pmrd
          Length = 93

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 5  cagaagagagtgagcacac 23




>48652_hvv-miR156a:pmrd
          Length = 394

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 4  cagaagagagtgagcacac 22




>48490_ghr-miR156c:pmrd
          Length = 97

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 6  cagaagagagtgagcacac 24




>48489_ghr-miR156b:pmrd
          Length = 113

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 6  cagaagagagtgagcacac 24




>48488_ghr-miR156a:pmrd
          Length = 104

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 12 cagaagagagtgagcacac 30




>48336_bna-miR156a:pmrd
          Length = 82

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 4  cagaagagagtgagcacac 22




>48248_ath-miRf11148-akr:pmrd
          Length = 96

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 93 cagaagagagtgagcacac 75




>48243_ath-miRf11143-akr:pmrd
          Length = 102

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 1  cagaagagagtgagcacacgcag 23
          |||||||||||||||||| ||||
Sbjct: 87 cagaagagagtgagcacatgcag 65




>47667_ath-miRf10567-akr:pmrd
          Length = 98

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 9  cagaagagagtgagcacac 27




>47357_ath-miRf10257-akr:pmrd
          Length = 94

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 6  cagaagagagtgagcacac 24




>47356_ath-miRf10256-akr:pmrd
          Length = 94

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 6  cagaagagagtgagcacac 24




>46916_ath-miR156g:pmrd
          Length = 103

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 14 cagaagagagtgagcacac 32




>46915_ath-miR156f:pmrd
          Length = 132

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacac 42




>46914_ath-miR156e:pmrd
          Length = 107

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 10 cagaagagagtgagcacac 28




>46913_ath-miR156d:pmrd
          Length = 118

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 21 cagaagagagtgagcacac 39




>46912_ath-miR156c:pmrd
          Length = 104

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 15 cagaagagagtgagcacac 33




>46911_ath-miR156b:pmrd
          Length = 183

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  cagaagagagtgagcacacgcag 23
          |||||||||||||||||| ||||
Sbjct: 50 cagaagagagtgagcacatgcag 72




>46910_ath-miR156a:pmrd
          Length = 123

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  cagaagagagtgagcacac 19
          |||||||||||||||||||
Sbjct: 24 cagaagagagtgagcacac 42