miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54665_stu-miR168:pmrd
Length = 133
Score = 198 bits (100), Expect = 7e-52
Identities = 122/133 (91%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacctacctcgccggcaacaatggcggtagctgacggcgacg 60
Query: 61 gcagcttaccggtaaaaacnnnnnnnnnnnacatgtctgtggcgtagtttgggtcccgcc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 gcagcttaccggtaaaaactttttttttttacatgtctgtggcgtagtttgggtcccgcc 120
Query: 121 ttgcatcaactga 133
|||||||||||||
Sbjct: 121 ttgcatcaactga 133
>54546_sly-miR168:pmrd
Length = 145
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggacct 23
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacct 23
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 tttgggtcccgccttgcatcaactga 133
||||||||| ||||||||||||||||
Sbjct: 120 tttgggtcctgccttgcatcaactga 145
>54388_rco-miR168:pmrd
Length = 156
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttgggtcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 113 ttggatcccgccttgcatcaactga 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcggga 38
>54375_pts-miR168b:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttgggtcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 116 ttggatcccgccttgcatcaactga 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54374_pts-miR168a:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttgggtcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54366_ptr-miR168:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttgggtcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 94 ttggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>51651_ptc-miR168b:pmrd
Length = 136
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttgggtcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 104 ttggatcccgccttgcatcaactga 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcggga 30
>51650_ptc-miR168a:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttgggtcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 128 ttggatcccgccttgcatcaactga 152
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcggga 30
>48560_gma-miR168:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttgggtcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 82 ttggatcccgccttgcatcaactga 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcggga 38
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttgggtcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 92 ttggatcccgccttgcatcaactga 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 13 tcgcttggtgcaggtcggga 32
>46959_ath-miR168m:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttgggtcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 80 ttggatcccgccttgcatcaactga 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>46957_ath-miR168a:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttgggtcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 97 ttggatcccgccttgcatcaactga 121
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcggga 37
>54802_vvi-miR168:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcggga 30
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 114 tcccgccttgcatcaactga 133
||||||||||||||||||||
Sbjct: 101 tcccgccttgcatcaactga 120
>48649_hte-miR168:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>48349_bna-miR168:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcggga 37
>46958_ath-miR168b:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcggga 38