miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>47339_ath-miRf10239-akr:pmrd
          Length = 129

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 93/104 (89%), Gaps = 4/104 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcggga-ctaattcg-ctgacacagccacgtggctctttttc--tt 56
           |||||||||||||||||||| | |||||| ||||||||||| |||| || ||   |  ||
Sbjct: 13  tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 72

                                                       
Query: 57  attggtttgtgagcagggattggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  attggtttgtgagcagggattggatcccgccttgcatcaactga 116




>46959_ath-miR168m:pmrd
          Length = 104

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 93/104 (89%), Gaps = 4/104 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcggga-ctaattcg-ctgacacagccacgtggctctttttc--tt 56
           |||||||||||||||||||| | |||||| ||||||||||| |||| || ||   |  ||
Sbjct: 1   tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 60

                                                       
Query: 57  attggtttgtgagcagggattggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attggtttgtgagcagggattggatcccgccttgcatcaactga 104




>46957_ath-miR168a:pmrd
          Length = 138

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 93/104 (89%), Gaps = 4/104 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcggga-ctaattcg-ctgacacagccacgtggctctttttc--tt 56
           |||||||||||||||||||| | |||||| ||||||||||| |||| || ||   |  ||
Sbjct: 18  tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 77

                                                       
Query: 57  attggtttgtgagcagggattggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  attggtttgtgagcagggattggatcccgccttgcatcaactga 121




>48349_bna-miR168:pmrd
          Length = 133

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 83/97 (85%), Gaps = 3/97 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcggg-actaattcgctgacacagccacgtggctctttttcttatt 59
           ||||||||||||||||||| ||| ||| |||||||| |||||||||  ||||   |  ||
Sbjct: 18  tcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg--ctttccatggtt 75

                                                
Query: 60  ggtttgtgagcagggattggatcccgccttgcatcaa 96
           || |||||||||||||| ||||||||||||| |||||
Sbjct: 76  ggcttgtgagcagggatcggatcccgccttgtatcaa 112




>54388_rco-miR168:pmrd
          Length = 156

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 112 attggatcccgccttgcatcaactga 137



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcggga 38




>54375_pts-miR168b:pmrd
          Length = 140

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 115 attggatcccgccttgcatcaactga 140



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>54374_pts-miR168a:pmrd
          Length = 118

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 93  attggatcccgccttgcatcaactga 118



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>54366_ptr-miR168:pmrd
          Length = 118

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 93  attggatcccgccttgcatcaactga 118



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>51651_ptc-miR168b:pmrd
          Length = 136

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 103 attggatcccgccttgcatcaactga 128



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcggga 30




>51650_ptc-miR168a:pmrd
          Length = 160

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 127 attggatcccgccttgcatcaactga 152



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcggga 30




>48560_gma-miR168:pmrd
          Length = 125

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  attggatcccgccttgcatcaactga 100
           ||||||||||||||||||||||||||
Sbjct: 81  attggatcccgccttgcatcaactga 106



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcggga 38




>54802_vvi-miR168:pmrd
          Length = 132

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 79  gatcccgccttgcatcaactga 100
           ||||||||||||||||||||||
Sbjct: 99  gatcccgccttgcatcaactga 120



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcggga 30




>54665_stu-miR168:pmrd
          Length = 133

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tcgcttggtgcaggtcgggac 21
          |||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggac 21



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 76  ttggatcccgccttgcatcaactga 100
           |||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133




>54546_sly-miR168:pmrd
          Length = 145

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tcgcttggtgcaggtcgggac 21
          |||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggac 21




>46958_ath-miR168b:pmrd
          Length = 124

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 40/45 (88%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                       
Query: 1  tcgcttggtgcaggtcggg-actaattcgctgacacagccacgtg 44
          ||||||||||||||||||| ||| ||| |||||||| | ||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattggctgacaccgacacgtg 63




>48649_hte-miR168:pmrd
          Length = 140

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20