miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54661_stu-miR157a:pmrd
Length = 91
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgctaatttcattcagcaaaagcatctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcactaatgatgatatgctaatttcattcagcaaaagcatctca 61
Query: 61 cttcatttgtgctctctatgcttctgtca 89
|||||||||||||||||||||||||||||
Sbjct: 62 cttcatttgtgctctctatgcttctgtca 90
>54532_sly-miR156a:pmrd
Length = 100
Score = 123 bits (62), Expect = 2e-29
Identities = 88/98 (89%), Gaps = 9/98 (9%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgctaatttcatt---------cagcaaa 51
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2 tgacagaagatagagagcactaatgatgatatgctaatttcattcaatttgggcagcaaa 61
Query: 52 agcatctcacttcatttgtgctctctatgcttctgtca 89
||||||||| ||||||||||||||||||||||||||||
Sbjct: 62 agcatctcaattcatttgtgctctctatgcttctgtca 99
>48790_nta-miR157:pmrd
Length = 131
Score = 65.9 bits (33), Expect = 4e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 49 aaaagcatctcacttcatttgtgctctctatgcttctgtca 89
|||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 90 aaaagcatctcaattcatttgtgctctctatgcttccgtca 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgat 30
|||||||||||||||||||| ||||||||
Sbjct: 2 tgacagaagatagagagcacagatgatgat 31
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
|||||||||||||||||||| ||||||||||||
Sbjct: 4 tgacagaagatagagagcacagatgatgatatgc 37
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctgtca 89
||||||||||||||||||||||||
Sbjct: 60 tttgtgctctctatgcttctgtca 83
>51600_ptc-miR156j:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
|||||||||||||||||||| ||||||||||||
Sbjct: 12 tgacagaagatagagagcacagatgatgatatgc 45
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctgtca 89
||||||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctgtca 91
>48698_mtr-miR157:pmrd
Length = 111
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||| ||||||| ||||||||||
Sbjct: 2 tgacagaagatagagggcactaaggatgatatgc 35
>48695_mtr-miR156e:pmrd
Length = 172
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
|||||||||||||||||||| ||||||||||||
Sbjct: 7 tgacagaagatagagagcacagatgatgatatgc 40
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctgtca 89
||||||||||||||||||||||||
Sbjct: 144 tttgtgctctctatgcttctgtca 167
>48537_gma-miR157c:pmrd
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||||||||| ||||||| ||||
Sbjct: 83 tgacagaagatagagagcactgatgatgaaatgc 50
>48532_gma-miR156e:pmrd
Length = 124
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||||||||| ||||||| ||||
Sbjct: 22 tgacagaagatagagagcactgatgatgaaatgc 55
>48531_gma-miR156d:pmrd
Length = 151
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
|||||||||||||||||||| ||||||||||||
Sbjct: 22 tgacagaagatagagagcacagatgatgatatgc 55
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctgtca 89
|||||||||||||| |||||||||
Sbjct: 108 tttgtgctctctatacttctgtca 131
>48393_bra-miR157a:pmrd
Length = 149
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||||||||||| ||||| ||||
Sbjct: 15 tgacagaagatagagagcactaaggatgacatgc 48
>48384_bol-miR157a:pmrd
Length = 106
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||||||||||| ||||| ||||
Sbjct: 7 tgacagaagatagagagcactaaggatgacatgc 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctgtca 89
|||||||||||||| |||||||||
Sbjct: 78 tttgtgctctctatacttctgtca 101
>48338_bna-miR156c:pmrd
Length = 155
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||||||||||| ||||| ||||
Sbjct: 19 tgacagaagatagagagcactaaggatgacatgc 52
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctgtca 89
|||||||||||||| |||||||||
Sbjct: 114 tttgtgctctctatacttctgtca 137
>48337_bna-miR156b:pmrd
Length = 208
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||||||||||| ||||| ||||
Sbjct: 26 tgacagaagatagagagcactaaggatgacatgc 59
>46927_ath-miR157d:pmrd
Length = 221
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||||||||||| |||| |||||
Sbjct: 24 tgacagaagatagagagcactaaggatgctatgc 57
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 tgtgctctctatgcttctgtca 89
||||||||||||||||||||||
Sbjct: 172 tgtgctctctatgcttctgtca 193
>46926_ath-miR157c:pmrd
Length = 217
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||||||||||| ||||| ||||
Sbjct: 25 tgacagaagatagagagcactaaggatgacatgc 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctgtca 89
|||||||||||||| |||||||||
Sbjct: 165 tttgtgctctctatacttctgtca 188
>46862_aqc-miR156b:pmrd
Length = 83
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
|||||||||||||||||||| ||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatgatgatatgc 34
Score = 50.1 bits (25), Expect = 3e-07
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 53 gcatctcacttcatttgtgctctctatgcttctgtca 89
|||||||||| | ||||||||||||||||||||||||
Sbjct: 46 gcatctcactcc-tttgtgctctctatgcttctgtca 81
>48631_gra-miR157b:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctgtca 89
||||||||||||||||||||||||
Sbjct: 63 tttgtgctctctatgcttctgtca 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 6 tgacagaagatagagagcac 25
>46861_aqc-miR156a:pmrd
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctgtca 89
||||||||||||||||||||||||
Sbjct: 56 tttgtgctctctatgcttctgtca 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>54533_sly-miR156b:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgctaatt 39
|||||||||||||||||||| ||| |||| ||||||||
Sbjct: 2 tgacagaagatagagagcacgaataatgaggtgctaatt 40
>54774_vvi-miR156i:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
|||||||||||||||||||| ||||||| ||||
Sbjct: 12 tgacagaagatagagagcacagatgatgaaatgc 45
Score = 44.1 bits (22), Expect = 2e-05
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 52 agcatctcacttcatttgtgctctctatgcttctgtca 89
||||||||||| | |||||||||||||| |||||||||
Sbjct: 54 agcatctcactcc-tttgtgctctctattcttctgtca 90
>54772_vvi-miR156g:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgat 30
|||||||||||||||||||| ||||||||
Sbjct: 12 tgacagaagatagagagcacagatgatgat 41
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||||||||| | ||||| ||||
Sbjct: 3 tgacagaagatagagagcactgacgatgaaatgc 36
>51598_ptc-miR156h:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
||||||||||||||||||||| | ||||| ||||
Sbjct: 12 tgacagaagatagagagcactgacgatgaaatgc 45
>51597_ptc-miR156g:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
|||||||||||||||||||| ||||||| ||||
Sbjct: 12 tgacagaagatagagagcacagatgatgaaatgc 45
>48697_mtr-miR156h:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatgatatgc 34
|||||||||||||||||||| ||||||| ||||
Sbjct: 7 tgacagaagatagagagcacagatgatgaaatgc 40
>51599_ptc-miR156i:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctg 86
|||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctg 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31
>48642_han-miR157a:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 gtgctctctatgcttctgtca 89
|||||||||||||||||||||
Sbjct: 65 gtgctctctatgcttctgtca 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>46924_ath-miR157a:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcactaatgatga 29
|||||||||||||||||||| |||||||
Sbjct: 5 tgacagaagatagagagcacagatgatga 33
>54771_vvi-miR156f:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31
>54570_smo-miR156b:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31
>54534_sly-miR156c:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>51552_pta-miR156b:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51551_pta-miR156a:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>48696_mtr-miR156f:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcac 26
>48675_lja-miR157a:pmrd
Length = 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>48630_gra-miR157a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 6 tgacagaagatagagagcac 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 tttgtgctctctatgcttctgtca 89
|||||||||| |||||||||||||
Sbjct: 73 tttgtgctctttatgcttctgtca 96
>48530_gma-miR156c:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 147 tgacagaagatagagagcac 166
>46925_ath-miR157b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 20 tgacagaagatagagagcac 39
