miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54661_stu-miR157a:pmrd
          Length = 91

 Score =  165 bits (83), Expect = 6e-42
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cagaagatagagagcactaatgatgatatgctaatttcattcagcaaaagcatctcactt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  cagaagatagagagcactaatgatgatatgctaatttcattcagcaaaagcatctcactt 64

                                 
Query: 61 catttgtgctctctatgcttctg 83
          |||||||||||||||||||||||
Sbjct: 65 catttgtgctctctatgcttctg 87




>54532_sly-miR156a:pmrd
          Length = 100

 Score =  111 bits (56), Expect = 8e-26
 Identities = 82/92 (89%), Gaps = 9/92 (9%)
 Strand = Plus / Plus

                                                                      
Query: 1  cagaagatagagagcactaatgatgatatgctaatttcatt---------cagcaaaagc 51
          |||||||||||||||||||||||||||||||||||||||||         ||||||||||
Sbjct: 5  cagaagatagagagcactaatgatgatatgctaatttcattcaatttgggcagcaaaagc 64

                                          
Query: 52 atctcacttcatttgtgctctctatgcttctg 83
          |||||| |||||||||||||||||||||||||
Sbjct: 65 atctcaattcatttgtgctctctatgcttctg 96




>48790_nta-miR157:pmrd
          Length = 131

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 46  aaaagcatctcacttcatttgtgctctctatgcttc 81
           |||||||||||| |||||||||||||||||||||||
Sbjct: 90  aaaagcatctcaattcatttgtgctctctatgcttc 125



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 1  cagaagatagagagcactaatgatgat 27
          |||||||||||||||||  ||||||||
Sbjct: 5  cagaagatagagagcacagatgatgat 31




>52045_ptc-miRf10223-akr:pmrd
          Length = 86

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||  ||||||||||||
Sbjct: 7  cagaagatagagagcacagatgatgatatgc 37



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 63 tttgtgctctctatgcttctg 83
          |||||||||||||||||||||
Sbjct: 60 tttgtgctctctatgcttctg 80




>51600_ptc-miR156j:pmrd
          Length = 100

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||  ||||||||||||
Sbjct: 15 cagaagatagagagcacagatgatgatatgc 45



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 63 tttgtgctctctatgcttctg 83
          |||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctg 88




>48698_mtr-miR157:pmrd
          Length = 111

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||| ||||||| ||||||||||
Sbjct: 5  cagaagatagagggcactaaggatgatatgc 35




>48695_mtr-miR156e:pmrd
          Length = 172

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||  ||||||||||||
Sbjct: 10 cagaagatagagagcacagatgatgatatgc 40



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 63  tttgtgctctctatgcttctg 83
           |||||||||||||||||||||
Sbjct: 144 tttgtgctctctatgcttctg 164




>48537_gma-miR157c:pmrd
          Length = 84

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||| ||||||| ||||
Sbjct: 80 cagaagatagagagcactgatgatgaaatgc 50




>48532_gma-miR156e:pmrd
          Length = 124

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||| ||||||| ||||
Sbjct: 25 cagaagatagagagcactgatgatgaaatgc 55




>48531_gma-miR156d:pmrd
          Length = 151

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||  ||||||||||||
Sbjct: 25 cagaagatagagagcacagatgatgatatgc 55




>48393_bra-miR157a:pmrd
          Length = 149

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||||| ||||| ||||
Sbjct: 18 cagaagatagagagcactaaggatgacatgc 48




>48384_bol-miR157a:pmrd
          Length = 106

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||||| ||||| ||||
Sbjct: 10 cagaagatagagagcactaaggatgacatgc 40




>48338_bna-miR156c:pmrd
          Length = 155

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||||| ||||| ||||
Sbjct: 22 cagaagatagagagcactaaggatgacatgc 52




>48337_bna-miR156b:pmrd
          Length = 208

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||||| ||||| ||||
Sbjct: 29 cagaagatagagagcactaaggatgacatgc 59




>46927_ath-miR157d:pmrd
          Length = 221

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||||| |||| |||||
Sbjct: 27 cagaagatagagagcactaaggatgctatgc 57



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 65  tgtgctctctatgcttctg 83
           |||||||||||||||||||
Sbjct: 172 tgtgctctctatgcttctg 190




>46926_ath-miR157c:pmrd
          Length = 217

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||||| ||||| ||||
Sbjct: 28 cagaagatagagagcactaaggatgacatgc 58




>46862_aqc-miR156b:pmrd
          Length = 83

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||  ||||||||||||
Sbjct: 4  cagaagatagagagcacagatgatgatatgc 34



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Plus

                                            
Query: 50 gcatctcacttcatttgtgctctctatgcttctg 83
          |||||||||| | |||||||||||||||||||||
Sbjct: 46 gcatctcactcc-tttgtgctctctatgcttctg 78




>51599_ptc-miR156i:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 63 tttgtgctctctatgcttctg 83
          |||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctg 88




>48631_gra-miR157b:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 63 tttgtgctctctatgcttctg 83
          |||||||||||||||||||||
Sbjct: 63 tttgtgctctctatgcttctg 83




>46861_aqc-miR156a:pmrd
          Length = 81

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 63 tttgtgctctctatgcttctg 83
          |||||||||||||||||||||
Sbjct: 56 tttgtgctctctatgcttctg 76




>54533_sly-miR156b:pmrd
          Length = 84

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                              
Query: 1  cagaagatagagagcactaatgatgatatgctaatt 36
          ||||||||||||||||| ||| ||||  ||||||||
Sbjct: 5  cagaagatagagagcacgaataatgaggtgctaatt 40




>54774_vvi-miR156i:pmrd
          Length = 103

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||  ||||||| ||||
Sbjct: 15 cagaagatagagagcacagatgatgaaatgc 45



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 32/35 (91%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                             
Query: 49 agcatctcacttcatttgtgctctctatgcttctg 83
          ||||||||||| | |||||||||||||| ||||||
Sbjct: 54 agcatctcactcc-tttgtgctctctattcttctg 87




>54772_vvi-miR156g:pmrd
          Length = 103

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 1  cagaagatagagagcactaatgatgat 27
          |||||||||||||||||  ||||||||
Sbjct: 15 cagaagatagagagcacagatgatgat 41




>52807_ptc-miRf10985-akr:pmrd
          Length = 87

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||| | ||||| ||||
Sbjct: 6  cagaagatagagagcactgacgatgaaatgc 36




>51598_ptc-miR156h:pmrd
          Length = 103

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||| | ||||| ||||
Sbjct: 15 cagaagatagagagcactgacgatgaaatgc 45




>51597_ptc-miR156g:pmrd
          Length = 103

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||  ||||||| ||||
Sbjct: 15 cagaagatagagagcacagatgatgaaatgc 45




>48697_mtr-miR156h:pmrd
          Length = 94

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 1  cagaagatagagagcactaatgatgatatgc 31
          |||||||||||||||||  ||||||| ||||
Sbjct: 10 cagaagatagagagcacagatgatgaaatgc 40