miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54661_stu-miR157a:pmrd
Length = 91
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgctaatttcattcagcaaaagcatctcactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcactaatgatgatatgctaatttcattcagcaaaagcatctcactt 64
Query: 61 catttgtgctctctatgcttctg 83
|||||||||||||||||||||||
Sbjct: 65 catttgtgctctctatgcttctg 87
>54532_sly-miR156a:pmrd
Length = 100
Score = 111 bits (56), Expect = 8e-26
Identities = 82/92 (89%), Gaps = 9/92 (9%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgctaatttcatt---------cagcaaaagc 51
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5 cagaagatagagagcactaatgatgatatgctaatttcattcaatttgggcagcaaaagc 64
Query: 52 atctcacttcatttgtgctctctatgcttctg 83
|||||| |||||||||||||||||||||||||
Sbjct: 65 atctcaattcatttgtgctctctatgcttctg 96
>48790_nta-miR157:pmrd
Length = 131
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 46 aaaagcatctcacttcatttgtgctctctatgcttc 81
|||||||||||| |||||||||||||||||||||||
Sbjct: 90 aaaagcatctcaattcatttgtgctctctatgcttc 125
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgat 27
||||||||||||||||| ||||||||
Sbjct: 5 cagaagatagagagcacagatgatgat 31
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||||||||
Sbjct: 7 cagaagatagagagcacagatgatgatatgc 37
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tttgtgctctctatgcttctg 83
|||||||||||||||||||||
Sbjct: 60 tttgtgctctctatgcttctg 80
>51600_ptc-miR156j:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||||||||
Sbjct: 15 cagaagatagagagcacagatgatgatatgc 45
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tttgtgctctctatgcttctg 83
|||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctg 88
>48698_mtr-miR157:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||| ||||||| ||||||||||
Sbjct: 5 cagaagatagagggcactaaggatgatatgc 35
>48695_mtr-miR156e:pmrd
Length = 172
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||||||||
Sbjct: 10 cagaagatagagagcacagatgatgatatgc 40
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tttgtgctctctatgcttctg 83
|||||||||||||||||||||
Sbjct: 144 tttgtgctctctatgcttctg 164
>48537_gma-miR157c:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||| ||||||| ||||
Sbjct: 80 cagaagatagagagcactgatgatgaaatgc 50
>48532_gma-miR156e:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||| ||||||| ||||
Sbjct: 25 cagaagatagagagcactgatgatgaaatgc 55
>48531_gma-miR156d:pmrd
Length = 151
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||||||||
Sbjct: 25 cagaagatagagagcacagatgatgatatgc 55
>48393_bra-miR157a:pmrd
Length = 149
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| ||||| ||||
Sbjct: 18 cagaagatagagagcactaaggatgacatgc 48
>48384_bol-miR157a:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| ||||| ||||
Sbjct: 10 cagaagatagagagcactaaggatgacatgc 40
>48338_bna-miR156c:pmrd
Length = 155
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| ||||| ||||
Sbjct: 22 cagaagatagagagcactaaggatgacatgc 52
>48337_bna-miR156b:pmrd
Length = 208
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| ||||| ||||
Sbjct: 29 cagaagatagagagcactaaggatgacatgc 59
>46927_ath-miR157d:pmrd
Length = 221
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| |||| |||||
Sbjct: 27 cagaagatagagagcactaaggatgctatgc 57
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 tgtgctctctatgcttctg 83
|||||||||||||||||||
Sbjct: 172 tgtgctctctatgcttctg 190
>46926_ath-miR157c:pmrd
Length = 217
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||||| ||||| ||||
Sbjct: 28 cagaagatagagagcactaaggatgacatgc 58
>46862_aqc-miR156b:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||||||||
Sbjct: 4 cagaagatagagagcacagatgatgatatgc 34
Score = 44.1 bits (22), Expect = 2e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 50 gcatctcacttcatttgtgctctctatgcttctg 83
|||||||||| | |||||||||||||||||||||
Sbjct: 46 gcatctcactcc-tttgtgctctctatgcttctg 78
>51599_ptc-miR156i:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tttgtgctctctatgcttctg 83
|||||||||||||||||||||
Sbjct: 68 tttgtgctctctatgcttctg 88
>48631_gra-miR157b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tttgtgctctctatgcttctg 83
|||||||||||||||||||||
Sbjct: 63 tttgtgctctctatgcttctg 83
>46861_aqc-miR156a:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tttgtgctctctatgcttctg 83
|||||||||||||||||||||
Sbjct: 56 tttgtgctctctatgcttctg 76
>54533_sly-miR156b:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgctaatt 36
||||||||||||||||| ||| |||| ||||||||
Sbjct: 5 cagaagatagagagcacgaataatgaggtgctaatt 40
>54774_vvi-miR156i:pmrd
Length = 103
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||| ||||
Sbjct: 15 cagaagatagagagcacagatgatgaaatgc 45
Score = 38.2 bits (19), Expect = 0.001
Identities = 32/35 (91%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 49 agcatctcacttcatttgtgctctctatgcttctg 83
||||||||||| | |||||||||||||| ||||||
Sbjct: 54 agcatctcactcc-tttgtgctctctattcttctg 87
>54772_vvi-miR156g:pmrd
Length = 103
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgat 27
||||||||||||||||| ||||||||
Sbjct: 15 cagaagatagagagcacagatgatgat 41
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||| | ||||| ||||
Sbjct: 6 cagaagatagagagcactgacgatgaaatgc 36
>51598_ptc-miR156h:pmrd
Length = 103
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
|||||||||||||||||| | ||||| ||||
Sbjct: 15 cagaagatagagagcactgacgatgaaatgc 45
>51597_ptc-miR156g:pmrd
Length = 103
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||| ||||
Sbjct: 15 cagaagatagagagcacagatgatgaaatgc 45
>48697_mtr-miR156h:pmrd
Length = 94
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcactaatgatgatatgc 31
||||||||||||||||| ||||||| ||||
Sbjct: 10 cagaagatagagagcacagatgatgaaatgc 40