miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48642_han-miR157a:pmrd
          Length = 86

 Score =  155 bits (78), Expect = 5e-39
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cagaagatagagagcacagagaagcatgaattgcacatagatattgcaattcactccttc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  cagaagatagagagcacagagaagcatgaattgcacatagatattgcaattcactccttc 64

                            
Query: 61 gtgctctctatgcttctg 78
          ||||||||||||||||||
Sbjct: 65 gtgctctctatgcttctg 82




>51599_ptc-miR156i:pmrd
          Length = 99

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 51 tcactccttcgtgctctctatgcttctg 78
          ||||||||| ||||||||||||||||||
Sbjct: 61 tcactcctttgtgctctctatgcttctg 88



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34




>48695_mtr-miR156e:pmrd
          Length = 172

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 51  tcactccttcgtgctctctatgcttctg 78
           ||||||||| ||||||||||||||||||
Sbjct: 137 tcactcctttgtgctctctatgcttctg 164



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 10 cagaagatagagagcacaga 29




>46862_aqc-miR156b:pmrd
          Length = 83

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 51 tcactccttcgtgctctctatgcttctg 78
          ||||||||| ||||||||||||||||||
Sbjct: 51 tcactcctttgtgctctctatgcttctg 78



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 4  cagaagatagagagcacaga 23




>52045_ptc-miRf10223-akr:pmrd
          Length = 86

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 cactccttcgtgctctctatgcttctg 78
          |||||||| ||||||||||||||||||
Sbjct: 54 cactcctttgtgctctctatgcttctg 80



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 7  cagaagatagagagcacaga 26




>51600_ptc-miR156j:pmrd
          Length = 100

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 cactccttcgtgctctctatgcttctg 78
          |||||||| ||||||||||||||||||
Sbjct: 62 cactcctttgtgctctctatgcttctg 88



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34




>48631_gra-miR157b:pmrd
          Length = 91

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 cactccttcgtgctctctatgcttctg 78
          |||||||| ||||||||||||||||||
Sbjct: 57 cactcctttgtgctctctatgcttctg 83



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 9  cagaagatagagagcacaga 28




>54774_vvi-miR156i:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 51 tcactccttcgtgctctctatgcttctg 78
          ||||||||| ||||||||||| ||||||
Sbjct: 60 tcactcctttgtgctctctattcttctg 87




>54772_vvi-miR156g:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34




>54570_smo-miR156b:pmrd
          Length = 112

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34




>51597_ptc-miR156g:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34




>48790_nta-miR157:pmrd
          Length = 131

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 5  cagaagatagagagcacaga 24




>48697_mtr-miR156h:pmrd
          Length = 94

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 10 cagaagatagagagcacaga 29




>48630_gra-miR157a:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 9  cagaagatagagagcacaga 28




>48531_gma-miR156d:pmrd
          Length = 151

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 25 cagaagatagagagcacaga 44




>46925_ath-miR157b:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 23 cagaagatagagagcacaga 42




>46924_ath-miR157a:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 8  cagaagatagagagcacaga 27




>46861_aqc-miR156a:pmrd
          Length = 81

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  cagaagatagagagcacaga 20
          ||||||||||||||||||||
Sbjct: 4  cagaagatagagagcacaga 23