miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48642_han-miR157a:pmrd
          Length = 86

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgacagaagatagagagcacagagaagcatgaattgcacatagatattgcaattcactcc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcacagagaagcatgaattgcacatagatattgcaattcactcc 61

                                  
Query: 61 ttcgtgctctctatgcttctgtca 84
          ||||||||||||||||||||||||
Sbjct: 62 ttcgtgctctctatgcttctgtca 85




>48695_mtr-miR156e:pmrd
          Length = 172

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 54  tcactccttcgtgctctctatgcttctgtca 84
           ||||||||| |||||||||||||||||||||
Sbjct: 137 tcactcctttgtgctctctatgcttctgtca 167



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 7  tgacagaagatagagagcacaga 29




>46862_aqc-miR156b:pmrd
          Length = 83

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 54 tcactccttcgtgctctctatgcttctgtca 84
          ||||||||| |||||||||||||||||||||
Sbjct: 51 tcactcctttgtgctctctatgcttctgtca 81



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 1  tgacagaagatagagagcacaga 23




>52045_ptc-miRf10223-akr:pmrd
          Length = 86

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 55 cactccttcgtgctctctatgcttctgtca 84
          |||||||| |||||||||||||||||||||
Sbjct: 54 cactcctttgtgctctctatgcttctgtca 83



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 4  tgacagaagatagagagcacaga 26




>51600_ptc-miR156j:pmrd
          Length = 100

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 55 cactccttcgtgctctctatgcttctgtca 84
          |||||||| |||||||||||||||||||||
Sbjct: 62 cactcctttgtgctctctatgcttctgtca 91



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34




>48631_gra-miR157b:pmrd
          Length = 91

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 55 cactccttcgtgctctctatgcttctgtca 84
          |||||||| |||||||||||||||||||||
Sbjct: 57 cactcctttgtgctctctatgcttctgtca 86



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 6  tgacagaagatagagagcacaga 28




>51599_ptc-miR156i:pmrd
          Length = 99

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 54 tcactccttcgtgctctctatgcttctg 81
          ||||||||| ||||||||||||||||||
Sbjct: 61 tcactcctttgtgctctctatgcttctg 88



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34




>54774_vvi-miR156i:pmrd
          Length = 103

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 54 tcactccttcgtgctctctatgcttctgtca 84
          ||||||||| ||||||||||| |||||||||
Sbjct: 60 tcactcctttgtgctctctattcttctgtca 90




>54772_vvi-miR156g:pmrd
          Length = 103

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34




>54570_smo-miR156b:pmrd
          Length = 112

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 61  ttcgtgctctctatgcttctgtca 84
           |||||||||||||| |||||||||
Sbjct: 77  ttcgtgctctctattcttctgtca 100




>51597_ptc-miR156g:pmrd
          Length = 103

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34




>48790_nta-miR157:pmrd
          Length = 131

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcacaga 24




>48697_mtr-miR156h:pmrd
          Length = 94

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 7  tgacagaagatagagagcacaga 29




>48630_gra-miR157a:pmrd
          Length = 101

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 6  tgacagaagatagagagcacaga 28



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 55 cactccttcgtgctctctatgcttctgtca 84
          |||||||| ||||||| |||||||||||||
Sbjct: 67 cactcctttgtgctctttatgcttctgtca 96




>48531_gma-miR156d:pmrd
          Length = 151

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 22 tgacagaagatagagagcacaga 44



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 56  actccttcgtgctctctatgcttctgtca 84
           ||||||| ||||||||||| |||||||||
Sbjct: 103 actcctttgtgctctctatacttctgtca 131




>46925_ath-miR157b:pmrd
          Length = 132

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 20 tgacagaagatagagagcacaga 42




>46924_ath-miR157a:pmrd
          Length = 98

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 5  tgacagaagatagagagcacaga 27




>46861_aqc-miR156a:pmrd
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tgacagaagatagagagcacaga 23
          |||||||||||||||||||||||
Sbjct: 1  tgacagaagatagagagcacaga 23



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 64 gtgctctctatgcttctgtca 84
          |||||||||||||||||||||
Sbjct: 59 gtgctctctatgcttctgtca 79




>54771_vvi-miR156f:pmrd
          Length = 105

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tgacagaagatagagagcaca 21
          |||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32




>54661_stu-miR157a:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 64 gtgctctctatgcttctgtca 84
          |||||||||||||||||||||
Sbjct: 70 gtgctctctatgcttctgtca 90



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcac 21




>54532_sly-miR156a:pmrd
          Length = 100

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 64 gtgctctctatgcttctgtca 84
          |||||||||||||||||||||
Sbjct: 79 gtgctctctatgcttctgtca 99



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcac 21




>51552_pta-miR156b:pmrd
          Length = 83

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tgacagaagatagagagcaca 21
          |||||||||||||||||||||
Sbjct: 3  tgacagaagatagagagcaca 23




>51551_pta-miR156a:pmrd
          Length = 83

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tgacagaagatagagagcaca 21
          |||||||||||||||||||||
Sbjct: 3  tgacagaagatagagagcaca 23




>48696_mtr-miR156f:pmrd
          Length = 94

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tgacagaagatagagagcaca 21
          |||||||||||||||||||||
Sbjct: 7  tgacagaagatagagagcaca 27




>48675_lja-miR157a:pmrd
          Length = 58

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  tgacagaagatagagagcaca 21
          |||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcaca 22




>48530_gma-miR156c:pmrd
          Length = 185

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   tgacagaagatagagagcaca 21
           |||||||||||||||||||||
Sbjct: 147 tgacagaagatagagagcaca 167




>48393_bra-miR157a:pmrd
          Length = 149

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 56  actccttcgtgctctctatgcttctgtca 84
           |||| |||||||||||||| |||||||||
Sbjct: 111 actctttcgtgctctctatacttctgtca 139



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 15 tgacagaagatagagagcac 34




>48337_bna-miR156b:pmrd
          Length = 208

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 56  actccttcgtgctctctatgcttctgtca 84
           |||| |||||||||||||| |||||||||
Sbjct: 150 actctttcgtgctctctatacttctgtca 178



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 26 tgacagaagatagagagcac 45




>46927_ath-miR157d:pmrd
          Length = 221

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  gtgctctctatgcttctgtca 84
           |||||||||||||||||||||
Sbjct: 173 gtgctctctatgcttctgtca 193



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 24 tgacagaagatagagagcac 43




>54534_sly-miR156c:pmrd
          Length = 83

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcac 21




>54533_sly-miR156b:pmrd
          Length = 84

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcac 21




>52807_ptc-miRf10985-akr:pmrd
          Length = 87

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 3  tgacagaagatagagagcac 22




>51598_ptc-miR156h:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31




>48537_gma-miR157c:pmrd
          Length = 84

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 83 tgacagaagatagagagcac 64




>48532_gma-miR156e:pmrd
          Length = 124

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 22 tgacagaagatagagagcac 41




>48384_bol-miR157a:pmrd
          Length = 106

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 7  tgacagaagatagagagcac 26




>48338_bna-miR156c:pmrd
          Length = 155

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 19 tgacagaagatagagagcac 38




>46926_ath-miR157c:pmrd
          Length = 217

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tgacagaagatagagagcac 20
          ||||||||||||||||||||
Sbjct: 25 tgacagaagatagagagcac 44




>54537_sly-miR157c:pmrd
          Length = 123

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   tgacagaagatagagagca 19
           |||||||||||||||||||
Sbjct: 104 tgacagaagatagagagca 122




>54536_sly-miR157b:pmrd
          Length = 430

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  tgacagaagatagagagca 19
          |||||||||||||||||||
Sbjct: 2  tgacagaagatagagagca 20




>54535_sly-miR157a:pmrd
          Length = 53

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  tgacagaagatagagagca 19
          |||||||||||||||||||
Sbjct: 2  tgacagaagatagagagca 20




>51323_pco-miR157:pmrd
          Length = 184

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  tgacagaagatagagagca 19
          |||||||||||||||||||
Sbjct: 2  tgacagaagatagagagca 20




>48677_lja-miR157c:pmrd
          Length = 460

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  tgacagaagatagagagca 19
          |||||||||||||||||||
Sbjct: 2  tgacagaagatagagagca 20




>48670_ini-miR157b:pmrd
          Length = 183

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  tgacagaagatagagagca 19
          |||||||||||||||||||
Sbjct: 2  tgacagaagatagagagca 20




>48669_ini-miR157a:pmrd
          Length = 126

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  tgacagaagatagagagca 19
          |||||||||||||||||||
Sbjct: 2  tgacagaagatagagagca 20




>48668_iba-miR157:pmrd
          Length = 283

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  tgacagaagatagagagca 19
          |||||||||||||||||||
Sbjct: 2  tgacagaagatagagagca 20