miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48662_hvv-miR170:pmrd
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 gatgttggctcgactcactcagaccacgccggagggagccatctgcggcggcggttctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgttggctcgactcactcagaccacgccggagggagccatctgcggcggcggttctga 60
Query: 61 ttgagccgtgccaatatc 78
||||||||||||||||||
Sbjct: 61 ttgagccgtgccaatatc 78
>54680_tae-miR170b:pmrd
Length = 94
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 gatgttggctcgactcactcagaccacgcc 30
||||||||||||||||||||||||||||||
Sbjct: 1 gatgttggctcgactcactcagaccacgcc 30
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 72 tctgattgagccgtgccaatatc 94
>55031_zma-miR171d:pmrd
Length = 121
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 cggcggttctgattgagccgtgccaatatc 78
||||| ||||||||||||||||||||||||
Sbjct: 73 cggcgtttctgattgagccgtgccaatatc 102
>54460_sbi-miR171i:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 50 ggcggttctgattgagccgtgccaatatc 78
|||| ||||||||||||||||||||||||
Sbjct: 60 ggcgtttctgattgagccgtgccaatatc 88
>55032_zma-miR171e:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 84 ttctgattgagccgtgccaatatc 107
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gatgttggctcgactcactcagac 24
|||||||||||| |||||||||||
Sbjct: 21 gatgttggctcggctcactcagac 44
>54455_sbi-miR171d:pmrd
Length = 154
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 112 ttctgattgagccgtgccaatatc 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 gatgttggctcgactcactcagaccac 27
|||||||||||| ||||||||||||||
Sbjct: 21 gatgttggctcggctcactcagaccac 47
>48905_osa-miR171n:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 76 ttctgattgagccgtgccaatatc 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gatgttggctcgactcactcagac 24
|||||||||||| |||||||||||
Sbjct: 1 gatgttggctcggctcactcagac 24
>48899_osa-miR171e:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 86 ttctgattgagccgtgccaatatc 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gatgttggctcgactcactcagac 24
|||||||||||| |||||||||||
Sbjct: 11 gatgttggctcggctcactcagac 34
>48898_osa-miR171d:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 102 ttctgattgagccgtgccaatatc 125
>48893_osa-miR170a:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 ttctgattgagccgtgccaatatc 78
||||||||||||||||||||||||
Sbjct: 76 ttctgattgagccgtgccaatatc 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gatgttggctcgactcactcagac 24
|||||||||||| |||||||||||
Sbjct: 1 gatgttggctcggctcactcagac 24
>55037_zma-miR171j:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 88 tctgattgagccgtgccaatatc 110
>54836_vvi-miR171i:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatc 89
>54828_vvi-miR171a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatc 88
>54453_sbi-miR171b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 91 tctgattgagccgtgccaatatc 113
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 58 tctgattgagccgtgccaatatc 80
>51691_ptc-miR171h:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatc 91
>51690_ptc-miR171g:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatc 91
>51689_ptc-miR171f:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>51688_ptc-miR171e:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatc 85
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 93 tctgattgagccgtgccaatatc 115
>48904_osa-miR171m:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48900_osa-miR171f:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>48894_osa-miR170b:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>46877_aqc-miR171b:pmrd
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tctgattgagccgtgccaatatc 78
|||||||||||||||||||||||
Sbjct: 53 tctgattgagccgtgccaatatc 75
>55039_zma-miR171m:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>55036_zma-miR171i:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatc 85
>55033_zma-miR171f:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatc 135
>55029_zma-miR171b:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>55024_zma-miR170m:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>54831_vvi-miR171d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>54830_vvi-miR171c:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>54551_sly-miR171a:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>54462_sbi-miR171k:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>54452_sbi-miR171a:pmrd
Length = 161
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatatc 142
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatc 83
>51692_ptc-miR171i:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 100 tgattgagccgtgccaatatc 120
>51685_ptc-miR171b:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatc 91
>51684_ptc-miR171a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92
>51346_ppe-miR171:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>51345_ppe-miR170:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>48897_osa-miR171c:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>48896_osa-miR171b:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>48723_mtr-miR171g:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatc 100
>48722_mtr-miR171d:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatc 100
>48403_bra-miR171a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>48386_bol-miR171a:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>48367_bna-miR171e:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>48366_bna-miR171d:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>48312_bdi-miR171c:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 64 tgattgagccgtgccaatatc 84
>46979_ath-miR171c:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>46880_aqc-miR171e:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 21 tgattgagccgtgccaatatc 1
>46879_aqc-miR171d:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 84 tgattgagccgtgccaatatc 104
>46876_aqc-miR171a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgattgagccgtgccaatatc 78
|||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatc 100
>54681_tae-miR171b:pmrd
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 gattgagccgtgccaatatc 78
||||||||||||||||||||
Sbjct: 61 gattgagccgtgccaatatc 80
