miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48667_hvv-miR172d:pmrd
          Length = 272

 Score =  178 bits (90), Expect = 4e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgccgcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgccgcgg 242

                                         
Query: 61  ctgttttggagaatcctgatgatgctgcag 90
           ||||||||||||||||||||||||||||||
Sbjct: 243 ctgttttggagaatcctgatgatgctgcag 272




>48666_hvv-miR172c:pmrd
          Length = 137

 Score =  178 bits (90), Expect = 4e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgccgcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32  atggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgccgcgg 91

                                         
Query: 61  ctgttttggagaatcctgatgatgctgcag 90
           ||||||||||||||||||||||||||||||
Sbjct: 92  ctgttttggagaatcctgatgatgctgcag 121




>48664_hvv-miR172a:pmrd
          Length = 255

 Score =  178 bits (90), Expect = 4e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgccgcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 atggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgccgcgg 225

                                         
Query: 61  ctgttttggagaatcctgatgatgctgcag 90
           ||||||||||||||||||||||||||||||
Sbjct: 226 ctgttttggagaatcctgatgatgctgcag 255




>48314_bdi-miR172d:pmrd
          Length = 93

 Score =  107 bits (54), Expect = 1e-24
 Identities = 83/92 (90%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 2  tggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgcc---gc 58
          ||||||||||||||| |||||||||||||||| || ||||||||||||||||| |   | 
Sbjct: 1  tggagccatcgggtcaaaccggaatgaggccggtgtggcggcgggggcagctgtcgtggt 60

                                          
Query: 59 ggctgttttggagaatcctgatgatgctgcag 90
          ||| ||||||||||||||||||||||||||||
Sbjct: 61 ggcagttttggagaatcctgatgatgctgcag 92




>55047_zma-miR172n:pmrd
          Length = 81

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                      
Query: 27 gaggccgatggggcggcgggggcagctgccgcggctgttttggagaatcctgatgatgct 86
          |||||||||||||||| || |||| ||| || ||| || |||||||||||||||||||||
Sbjct: 18 gaggccgatggggcggtggtggcatctgtcgtggcggtgttggagaatcctgatgatgct 77

             
Query: 87 gca 89
          |||
Sbjct: 78 gca 80




>48911_osa-miR172n:pmrd
          Length = 62

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 65 tttggagaatcctgatgatgctgcag 90
          ||||||||||||||||||||||||||
Sbjct: 37 tttggagaatcctgatgatgctgcag 62




>48910_osa-miR172m:pmrd
          Length = 297

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 65  tttggagaatcctgatgatgctgcag 90
           ||||||||||||||||||||||||||
Sbjct: 272 tttggagaatcctgatgatgctgcag 297




>54641_sof-miR172a:pmrd
          Length = 300

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 69  gagaatcctgatgatgctgcag 90
           ||||||||||||||||||||||
Sbjct: 279 gagaatcctgatgatgctgcag 300




>48913_osa-miR172p:pmrd
          Length = 318

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 69  gagaatcctgatgatgctgcag 90
           ||||||||||||||||||||||
Sbjct: 297 gagaatcctgatgatgctgcag 318




>55046_zma-miR172m:pmrd
          Length = 455

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 70 agaatcctgatgatgctgcag 90
          |||||||||||||||||||||
Sbjct: 1  agaatcctgatgatgctgcag 21




>54755_tca-miR172:pmrd
          Length = 240

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 70 agaatcctgatgatgctgcag 90
          |||||||||||||||||||||
Sbjct: 1  agaatcctgatgatgctgcag 21




>54684_tae-miR172b:pmrd
          Length = 118

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 70 agaatcctgatgatgctgcag 90
          |||||||||||||||||||||
Sbjct: 1  agaatcctgatgatgctgcag 21




>54683_tae-miR172a:pmrd
          Length = 100

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 70 agaatcctgatgatgctgcag 90
          |||||||||||||||||||||
Sbjct: 1  agaatcctgatgatgctgcag 21




>51706_ptc-miR172i:pmrd
          Length = 125

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 69  gagaatcctgatgatgctgca 89
           |||||||||||||||||||||
Sbjct: 96  gagaatcctgatgatgctgca 116




>51549_psi-miR172:pmrd
          Length = 68

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 69 gagaatcctgatgatgctgca 89
          |||||||||||||||||||||
Sbjct: 47 gagaatcctgatgatgctgca 67




>51337_pga-miR172:pmrd
          Length = 248

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 69  gagaatcctgatgatgctgca 89
           |||||||||||||||||||||
Sbjct: 227 gagaatcctgatgatgctgca 247




>48912_osa-miR172o:pmrd
          Length = 53

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 70 agaatcctgatgatgctgcag 90
          |||||||||||||||||||||
Sbjct: 1  agaatcctgatgatgctgcag 21




>46989_ath-miR172m:pmrd
          Length = 141

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 70 agaatcctgatgatgctgcag 90
          |||||||||||||||||||||
Sbjct: 1  agaatcctgatgatgctgcag 21