miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48667_hvv-miR172d:pmrd
          Length = 272

 Score =  240 bits (121), Expect = 2e-64
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtggtggtgttggttgcttgacgacgatgatggagccatcgggtcgaaccggaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tggtggtggtgttggttgcttgacgacgatgatggagccatcgggtcgaaccggaatgag 211

                                                                       
Query: 61  gccgatggggcggcgggggcagctgccgcggctgttttggagaatcctgatgatgctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gccgatggggcggcgggggcagctgccgcggctgttttggagaatcctgatgatgctgca 271

            
Query: 121 g 121
           |
Sbjct: 272 g 272




>48664_hvv-miR172a:pmrd
          Length = 255

 Score =  240 bits (121), Expect = 2e-64
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtggtggtgttggttgcttgacgacgatgatggagccatcgggtcgaaccggaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tggtggtggtgttggttgcttgacgacgatgatggagccatcgggtcgaaccggaatgag 194

                                                                       
Query: 61  gccgatggggcggcgggggcagctgccgcggctgttttggagaatcctgatgatgctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gccgatggggcggcgggggcagctgccgcggctgttttggagaatcctgatgatgctgca 254

            
Query: 121 g 121
           |
Sbjct: 255 g 255




>48665_hvv-miR172b:pmrd
          Length = 90

 Score =  178 bits (90), Expect = 7e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 32  atggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgccgcgg 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgccgcgg 60

                                         
Query: 92  ctgttttggagaatcctgatgatgctgcag 121
           ||||||||||||||||||||||||||||||
Sbjct: 61  ctgttttggagaatcctgatgatgctgcag 90




>48314_bdi-miR172d:pmrd
          Length = 93

 Score =  109 bits (55), Expect = 5e-25
 Identities = 84/93 (90%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                       
Query: 33  tggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgcc---gc 89
           ||||||||||||||| |||||||||||||||| || ||||||||||||||||| |   | 
Sbjct: 1   tggagccatcgggtcaaaccggaatgaggccggtgtggcggcgggggcagctgtcgtggt 60

                                            
Query: 90  ggctgttttggagaatcctgatgatgctgcagc 122
           ||| |||||||||||||||||||||||||||||
Sbjct: 61  ggcagttttggagaatcctgatgatgctgcagc 93




>55047_zma-miR172n:pmrd
          Length = 81

 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                       
Query: 58  gaggccgatggggcggcgggggcagctgccgcggctgttttggagaatcctgatgatgct 117
           |||||||||||||||| || |||| ||| || ||| || |||||||||||||||||||||
Sbjct: 18  gaggccgatggggcggtggtggcatctgtcgtggcggtgttggagaatcctgatgatgct 77

              
Query: 118 gca 120
           |||
Sbjct: 78  gca 80




>54683_tae-miR172a:pmrd
          Length = 100

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 101 agaatcctgatgatgctgcagcggacga 128
           ||||||||||||||||||||||||||||
Sbjct: 1   agaatcctgatgatgctgcagcggacga 28




>48911_osa-miR172n:pmrd
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 96  tttggagaatcctgatgatgctgcag 121
           ||||||||||||||||||||||||||
Sbjct: 37  tttggagaatcctgatgatgctgcag 62




>48910_osa-miR172m:pmrd
          Length = 297

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 96  tttggagaatcctgatgatgctgcag 121
           ||||||||||||||||||||||||||
Sbjct: 272 tttggagaatcctgatgatgctgcag 297




>54684_tae-miR172b:pmrd
          Length = 118

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 101 agaatcctgatgatgctgcagcgga 125
           |||||||||||||||||||||||||
Sbjct: 1   agaatcctgatgatgctgcagcgga 25




>48912_osa-miR172o:pmrd
          Length = 53

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 101 agaatcctgatgatgctgcagcgga 125
           |||||||||||||||||||||||||
Sbjct: 1   agaatcctgatgatgctgcagcgga 25




>54641_sof-miR172a:pmrd
          Length = 300

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 100 gagaatcctgatgatgctgcag 121
           ||||||||||||||||||||||
Sbjct: 279 gagaatcctgatgatgctgcag 300




>48913_osa-miR172p:pmrd
          Length = 318

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 100 gagaatcctgatgatgctgcag 121
           ||||||||||||||||||||||
Sbjct: 297 gagaatcctgatgatgctgcag 318




>46989_ath-miR172m:pmrd
          Length = 141

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 101 agaatcctgatgatgctgcagc 122
           ||||||||||||||||||||||
Sbjct: 1   agaatcctgatgatgctgcagc 22




>55046_zma-miR172m:pmrd
          Length = 455

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 agaatcctgatgatgctgcag 121
           |||||||||||||||||||||
Sbjct: 1   agaatcctgatgatgctgcag 21




>54755_tca-miR172:pmrd
          Length = 240

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 agaatcctgatgatgctgcag 121
           |||||||||||||||||||||
Sbjct: 1   agaatcctgatgatgctgcag 21




>51706_ptc-miR172i:pmrd
          Length = 125

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 100 gagaatcctgatgatgctgca 120
           |||||||||||||||||||||
Sbjct: 96  gagaatcctgatgatgctgca 116




>51549_psi-miR172:pmrd
          Length = 68

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 100 gagaatcctgatgatgctgca 120
           |||||||||||||||||||||
Sbjct: 47  gagaatcctgatgatgctgca 67




>51337_pga-miR172:pmrd
          Length = 248

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 100 gagaatcctgatgatgctgca 120
           |||||||||||||||||||||
Sbjct: 227 gagaatcctgatgatgctgca 247




>46987_ath-miR172d:pmrd
          Length = 124

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 100 gagaatcctgatgatgctgcagcgg 124
           ||||||| |||||||||||||||||
Sbjct: 87  gagaatcttgatgatgctgcagcgg 111