miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48664_hvv-miR172a:pmrd
Length = 255
Score = 498 bits (251), Expect = e-141
Identities = 254/255 (99%)
Strand = Plus / Plus
Query: 18 atacagtcatgaatccaatccactacatgaaaccgccccggcgcaagaccgaaaacgctg 77
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 atacagtcatgaatccaatccactacatgaaaccgccccggcgcaagtccgaaaacgctg 60
Query: 78 aaacgccggaggagcaaaaaagatactggcttcccagaacatttacagtatggcttcttt 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaacgccggaggagcaaaaaagatactggcttcccagaacatttacagtatggcttcttt 120
Query: 138 ttcagcgggggtggtggtggtggtgttggttgcttgacgacgatgatggagccatcgggt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcagcgggggtggtggtggtggtgttggttgcttgacgacgatgatggagccatcgggt 180
Query: 198 cgaaccggaatgaggccgatggggcggcgggggcagctgccgcggctgttttggagaatc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgaaccggaatgaggccgatggggcggcgggggcagctgccgcggctgttttggagaatc 240
Query: 258 ctgatgatgctgcag 272
|||||||||||||||
Sbjct: 241 ctgatgatgctgcag 255
>48666_hvv-miR172c:pmrd
Length = 137
Score = 240 bits (121), Expect = 5e-64
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 152 tggtggtggtgttggttgcttgacgacgatgatggagccatcgggtcgaaccggaatgag 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtggtggtgttggttgcttgacgacgatgatggagccatcgggtcgaaccggaatgag 60
Query: 212 gccgatggggcggcgggggcagctgccgcggctgttttggagaatcctgatgatgctgca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccgatggggcggcgggggcagctgccgcggctgttttggagaatcctgatgatgctgca 120
Query: 272 g 272
|
Sbjct: 121 g 121
>48665_hvv-miR172b:pmrd
Length = 90
Score = 178 bits (90), Expect = 1e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 183 atggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgccgcgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgccgcgg 60
Query: 243 ctgttttggagaatcctgatgatgctgcag 272
||||||||||||||||||||||||||||||
Sbjct: 61 ctgttttggagaatcctgatgatgctgcag 90
>48314_bdi-miR172d:pmrd
Length = 93
Score = 107 bits (54), Expect = 4e-24
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 184 tggagccatcgggtcgaaccggaatgaggccgatggggcggcgggggcagctgcc---gc 240
||||||||||||||| |||||||||||||||| || ||||||||||||||||| | |
Sbjct: 1 tggagccatcgggtcaaaccggaatgaggccggtgtggcggcgggggcagctgtcgtggt 60
Query: 241 ggctgttttggagaatcctgatgatgctgcag 272
||| ||||||||||||||||||||||||||||
Sbjct: 61 ggcagttttggagaatcctgatgatgctgcag 92
>55047_zma-miR172n:pmrd
Length = 81
Score = 69.9 bits (35), Expect = 1e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 209 gaggccgatggggcggcgggggcagctgccgcggctgttttggagaatcctgatgatgct 268
|||||||||||||||| || |||| ||| || ||| || |||||||||||||||||||||
Sbjct: 18 gaggccgatggggcggtggtggcatctgtcgtggcggtgttggagaatcctgatgatgct 77
Query: 269 gca 271
|||
Sbjct: 78 gca 80
>48911_osa-miR172n:pmrd
Length = 62
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 247 tttggagaatcctgatgatgctgcag 272
||||||||||||||||||||||||||
Sbjct: 37 tttggagaatcctgatgatgctgcag 62
>48910_osa-miR172m:pmrd
Length = 297
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 247 tttggagaatcctgatgatgctgcag 272
||||||||||||||||||||||||||
Sbjct: 272 tttggagaatcctgatgatgctgcag 297
>54641_sof-miR172a:pmrd
Length = 300
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 251 gagaatcctgatgatgctgcag 272
||||||||||||||||||||||
Sbjct: 279 gagaatcctgatgatgctgcag 300
>48913_osa-miR172p:pmrd
Length = 318
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 251 gagaatcctgatgatgctgcag 272
||||||||||||||||||||||
Sbjct: 297 gagaatcctgatgatgctgcag 318
>55046_zma-miR172m:pmrd
Length = 455
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 252 agaatcctgatgatgctgcag 272
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>54755_tca-miR172:pmrd
Length = 240
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 252 agaatcctgatgatgctgcag 272
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>54684_tae-miR172b:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 252 agaatcctgatgatgctgcag 272
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>54683_tae-miR172a:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 252 agaatcctgatgatgctgcag 272
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>51706_ptc-miR172i:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 251 gagaatcctgatgatgctgca 271
|||||||||||||||||||||
Sbjct: 96 gagaatcctgatgatgctgca 116
>51549_psi-miR172:pmrd
Length = 68
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 251 gagaatcctgatgatgctgca 271
|||||||||||||||||||||
Sbjct: 47 gagaatcctgatgatgctgca 67
>51337_pga-miR172:pmrd
Length = 248
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 251 gagaatcctgatgatgctgca 271
|||||||||||||||||||||
Sbjct: 227 gagaatcctgatgatgctgca 247
>48912_osa-miR172o:pmrd
Length = 53
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 252 agaatcctgatgatgctgcag 272
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>46989_ath-miR172m:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 252 agaatcctgatgatgctgcag 272
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
