miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>52901_ptc-miRf11079-akr:pmrd
          Length = 171

 Score =  321 bits (162), Expect = 9e-89
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 64

                                                                       
Query: 61  cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 124

                                                     
Query: 121 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 166




>53142_ptc-miRf11320-akr:pmrd
          Length = 167

 Score =  167 bits (84), Expect = 3e-42
 Identities = 142/162 (87%), Gaps = 7/162 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct: 5   gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 64

                                                                       
Query: 61  cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 120
             ||||||||||||       |||||| |||||||||||||||| |||| |||| ||| |
Sbjct: 65  gacatttcttgctg-------gagttatgactcttacctactatagattgtgttggcttc 117

                                                     
Query: 121 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 162
           || ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 118 agcgagttagttcttcatgtgcctgtcttccccatcatgatc 159




>51623_ptc-miR164e:pmrd
          Length = 155

 Score =  167 bits (84), Expect = 3e-42
 Identities = 142/162 (87%), Gaps = 7/162 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct: 1   gtgagcaagatggagaagcagggcacgtgcattactaactcatgcacacagagtgagaga 60

                                                                       
Query: 61  cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 120
             ||||||||||||       |||||| |||||||||||||||| |||| |||| ||| |
Sbjct: 61  gacatttcttgctg-------gagttatgactcttacctactatagattgtgttggcttc 113

                                                     
Query: 121 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 162
           || ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 114 agcgagttagttcttcatgtgcctgtcttccccatcatgatc 155




>51348_ppl-miR164:pmrd
          Length = 159

 Score =  167 bits (84), Expect = 3e-42
 Identities = 142/162 (87%), Gaps = 7/162 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagcaagatggagaagcagggcacgtgcactactaactcatgcacacagagagggaga 60
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||| | ||||
Sbjct: 1   gtgagcaagatggagaagcagggcacgtgcattactaactcatgcatacagagtgagaga 60

                                                                       
Query: 61  cgcatttcttgctggagttacgagttacgactcttacctactattgattttgttagctcc 120
             |||||||||||       ||||||| |||||||||||||||| ||||||||| ||  |
Sbjct: 61  gacatttcttgct-------cgagttatgactcttacctactatagattttgttggcctc 113

                                                     
Query: 121 agtgagttagttattcatgtgcctgtcttcctcatcatgatc 162
           |||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 114 agtgagttagttcttcatgtgcctgtcttccccatcatgatc 155




>54787_vvi-miR164c:pmrd
          Length = 97

 Score = 75.8 bits (38), Expect = 9e-15
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                        
Query: 2  tgagcaagatggagaagcagggcacgtgcactactaactcatgcac 47
          |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 2  tgagcaagatggagaagcagggcacgtgcattactagctcatgcac 47




>48709_mtr-miR164b:pmrd
          Length = 144

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                 
Query: 6  caagatggagaagcagggcacgtgcactactaactcatg 44
          |||||||||||||||||||||||||| ||||||||||||
Sbjct: 1  caagatggagaagcagggcacgtgcaatactaactcatg 39




>47347_ath-miRf10247-akr:pmrd
          Length = 159

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 6  caagatggagaagcagggcacgtgcactactaactcat 43
          |||||||||||||||||||||||||| ||||| |||||
Sbjct: 1  caagatggagaagcagggcacgtgcattactagctcat 38




>48473_csi-miR164:pmrd
          Length = 168

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 11 tggagaagcagggcacgtgcactactaactca 42
          ||||||||||||||||||||| ||||||||||
Sbjct: 1  tggagaagcagggcacgtgcattactaactca 32




>46941_ath-miR164b:pmrd
          Length = 153

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 9  gatggagaagcagggcacgtgcactactaactcat 43
          ||||||||||||||||||||||| ||||| |||||
Sbjct: 1  gatggagaagcagggcacgtgcattactagctcat 35




>54788_vvi-miR164d:pmrd
          Length = 118

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  gatggagaagcagggcacgtgca 31
          |||||||||||||||||||||||
Sbjct: 9  gatggagaagcagggcacgtgca 31




>46942_ath-miR164c:pmrd
          Length = 102

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gatggagaagcagggcacgtgc 30
          ||||||||||||||||||||||
Sbjct: 9  gatggagaagcagggcacgtgc 30




>54956_zma-miR164h:pmrd
          Length = 96

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 4  tggagaagcagggcacgtgca 24




>54955_zma-miR164g:pmrd
          Length = 116

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54954_zma-miR164f:pmrd
          Length = 177

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54953_zma-miR164e:pmrd
          Length = 242

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 4  tggagaagcagggcacgtgca 24




>54952_zma-miR164d:pmrd
          Length = 216

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 20 tggagaagcagggcacgtgca 40




>54951_zma-miR164c:pmrd
          Length = 270

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgca 38




>54950_zma-miR164b:pmrd
          Length = 128

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgca 41




>54949_zma-miR164a:pmrd
          Length = 152

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgca 39




>54785_vvi-miR164a:pmrd
          Length = 121

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>54676_tae-miR164b:pmrd
          Length = 152

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54414_sbi-miR164e:pmrd
          Length = 205

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23




>54413_sbi-miR164d:pmrd
          Length = 160

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54410_sbi-miR164:pmrd
          Length = 126

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>51862_ptc-miRf10040-akr:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 77 tggagaagcagggcacgtgca 57




>51622_ptc-miR164d:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>51621_ptc-miR164c:pmrd
          Length = 82

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>51619_ptc-miR164a:pmrd
          Length = 85

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>50414_osa-miRf11199-akr:pmrd
          Length = 146

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 13 tggagaagcagggcacgtgca 33




>48843_osa-miR164f:pmrd
          Length = 210

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 24 tggagaagcagggcacgtgca 44




>48839_osa-miR164b:pmrd
          Length = 109

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 9  tggagaagcagggcacgtgca 29




>48838_osa-miR164a:pmrd
          Length = 156

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 17 tggagaagcagggcacgtgca 37




>48710_mtr-miR164c:pmrd
          Length = 86

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgca 26




>48708_mtr-miR164a:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgca 26




>48547_gma-miR164:pmrd
          Length = 95

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>48419_cav-miR164:pmrd
          Length = 95

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>48398_bra-miR164a:pmrd
          Length = 92

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 10 tggagaagcagggcacgtgca 30




>48341_bna-miR164:pmrd
          Length = 86

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 7  tggagaagcagggcacgtgca 27




>47540_ath-miRf10440-akr:pmrd
          Length = 113

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 95 tggagaagcagggcacgtgca 75




>47539_ath-miRf10439-akr:pmrd
          Length = 115

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 96 tggagaagcagggcacgtgca 76




>46940_ath-miR164a:pmrd
          Length = 113

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgca 39




>54411_sbi-miR164b:pmrd
          Length = 111

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tggagaagcagggcacgtgc 30
          ||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgc 40




>48841_osa-miR164d:pmrd
          Length = 94

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tggagaagcagggcacgtgc 30
          ||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgc 30