miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>52427_ptc-miRf10605-akr:pmrd
          Length = 116

 Score =  186 bits (94), Expect = 2e-48
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 71

                                             
Query: 61  tgtggggttgggcgtggacgcgtctaggtacaac 94
           ||||||||||||||||||||||||||||||||||
Sbjct: 72  tgtggggttgggcgtggacgcgtctaggtacaac 105



 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 60 atgtggggttgggcgtggacgcgtctaggt 89
          ||||||||||||||||||||||||| ||||
Sbjct: 5  atgtggggttgggcgtggacgcgtccaggt 34



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 1   gttgggcgtggacgcgtccaggtctaacgtggggttgg 38
           |||||||||||||||||| ||||  ||| |||||||||
Sbjct: 78  gttgggcgtggacgcgtctaggtacaacatggggttgg 115




>52426_ptc-miRf10604-akr:pmrd
          Length = 160

 Score =  186 bits (94), Expect = 2e-48
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60

                                            
Query: 61 tgtggggttgggcgtggacgcgtctaggtacaac 94
          ||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtggggttgggcgtggacgcgtctaggtacaac 94



 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 78/94 (82%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
           |||||||||||||||||| ||||  ||| ||||||||| |   | ||||| |||||| ||
Sbjct: 67  gttgggcgtggacgcgtctaggtacaacatggggttggtcggggacgcgtctagacccaa 126

                                             
Query: 61  tgtggggttgggcgtggacgcgtctaggtacaac 94
             |||||||||||||||||| ||| |||| ||||
Sbjct: 127 catggggttgggcgtggacgtgtccaggtccaac 160




>53433_ptc-miRf11611-akr:pmrd
          Length = 105

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 53 agacctaatgtggggttgggcgtggacgcgtctaggtacaac 94
          ||||| || |||||||||||||||||||||| ||||| ||||
Sbjct: 16 agacccaacgtggggttgggcgtggacgcgtataggtccaac 57




>52751_ptc-miRf10929-akr:pmrd
          Length = 119

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                              
Query: 59 aatgtggggttgggcgtggacgcgtctaggtacaac 94
          ||||||||||||||||| || |||||||||| ||||
Sbjct: 98 aatgtggggttgggcgtagaggcgtctaggtccaac 63




>52728_ptc-miRf10906-akr:pmrd
          Length = 123

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 3  tgggcgtggacgcgtccaggtctaacgtggggttgg 38
          |||||||||||||||||||||| ||| | |||||||
Sbjct: 1  tgggcgtggacgcgtccaggtccaacatagggttgg 36




>52009_ptc-miRf10187-akr:pmrd
          Length = 113

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  gttgggcgtggacgcgtccaggtc 24
          ||||||||||||||||||||||||
Sbjct: 11 gttgggcgtggacgcgtccaggtc 34



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 65 gggttgggcgtggacgcgtctaggtacaac 94
          |||||||||||||||||||| |||| ||||
Sbjct: 9  gggttgggcgtggacgcgtccaggtccaac 38




>54019_ptc-miRf12197-akr:pmrd
          Length = 83

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 1  gttgggcgtggacgcgtccaggtctaacgtggggttggg 39
          |||||||| ||||||||||||||| ||| || |||||||
Sbjct: 45 gttgggcgcggacgcgtccaggtccaacatgtggttggg 83



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                    
Query: 53 agacctaatgtggggttgggcgtggacgcgtctaggtacaac 94
          ||||| || ||||||||||||| ||||||||| |||| ||||
Sbjct: 31 agacccaacgtggggttgggcgcggacgcgtccaggtccaac 72




>54323_ptc-miRf12501-akr:pmrd
          Length = 84

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 6  gcgtggacgcgtccaggtctaacgtggggttggg 39
          ||||||||||||||||||| ||| ||| ||||||
Sbjct: 1  gcgtggacgcgtccaggtccaacatggagttggg 34




>53953_ptc-miRf12131-akr:pmrd
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gttgggcgtggacgcgtccagg 22
          ||||||||||||||||||||||
Sbjct: 14 gttgggcgtggacgcgtccagg 35




>53932_ptc-miRf12110-akr:pmrd
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                      
Query: 1  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
          ||||||||||||||| |||||||| ||| ||  |||||||   | |||||  ||||| ||
Sbjct: 1  gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 60

                            
Query: 61 tgtggggttgggcgtgga 78
           ||| |||||||||||||
Sbjct: 61 cgtgaggttgggcgtgga 78




>53931_ptc-miRf12109-akr:pmrd
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                      
Query: 1  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
          ||||||||||||||| |||||||| ||| ||  |||||||   | |||||  ||||| ||
Sbjct: 1  gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 60

                            
Query: 61 tgtggggttgggcgtgga 78
           ||| |||||||||||||
Sbjct: 61 cgtgaggttgggcgtgga 78




>53930_ptc-miRf12108-akr:pmrd
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                      
Query: 1  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
          ||||||||||||||| |||||||| ||| ||  |||||||   | |||||  ||||| ||
Sbjct: 1  gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 60

                            
Query: 61 tgtggggttgggcgtgga 78
           ||| |||||||||||||
Sbjct: 61 cgtgaggttgggcgtgga 78




>53929_ptc-miRf12107-akr:pmrd
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                      
Query: 1  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
          ||||||||||||||| |||||||| ||| ||  |||||||   | |||||  ||||| ||
Sbjct: 1  gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 60

                            
Query: 61 tgtggggttgggcgtgga 78
           ||| |||||||||||||
Sbjct: 61 cgtgaggttgggcgtgga 78




>53021_ptc-miRf11199-akr:pmrd
          Length = 128

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 19  caggtctaacgtggggttgggcattgtcgcgtttagacctaatgtggggttgggcgtg 76
           |||||| ||| ||| ||||| | | ||||||| |||||| |||||||||||| |||||
Sbjct: 55  caggtccaacatggcgttggacgtggtcgcgtctagacccaatgtggggttgtgcgtg 112




>52787_ptc-miRf10965-akr:pmrd
          Length = 97

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 3  tgggcgtggacgcgtccaggtc 24
          ||||||||||||||||||||||
Sbjct: 28 tgggcgtggacgcgtccaggtc 7




>52786_ptc-miRf10964-akr:pmrd
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 3  tgggcgtggacgcgtccaggtc 24
          ||||||||||||||||||||||
Sbjct: 29 tgggcgtggacgcgtccaggtc 8




>52425_ptc-miRf10603-akr:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 59  aatgtggggttgggcgtggacgcgtc 84
           ||||||||||||||||||||| ||||
Sbjct: 76  aatgtggggttgggcgtggacacgtc 101




>52301_ptc-miRf10479-akr:pmrd
          Length = 86

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                        
Query: 44 gtcgcgtttagacctaatgtggggttgggcgtggacgcgtctaggt 89
          ||||||| ||| || || ||||||||||| ||||||||||| ||||
Sbjct: 40 gtcgcgtctaggcccaaagtggggttgggtgtggacgcgtccaggt 85



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  gttgggcgtggacgcgtccaggtc 24
          |||||| |||||||||||||||||
Sbjct: 63 gttgggtgtggacgcgtccaggtc 86




>52019_ptc-miRf10197-akr:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                      
Query: 1  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
          ||||||||||||||| |||||||| ||| ||  |||||||   | |||||  ||||| ||
Sbjct: 82 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 23

                            
Query: 61 tgtggggttgggcgtgga 78
           ||| |||||||||||||
Sbjct: 22 cgtgaggttgggcgtgga 5




>52018_ptc-miRf10196-akr:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                      
Query: 1  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
          ||||||||||||||| |||||||| ||| ||  |||||||   | |||||  ||||| ||
Sbjct: 82 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 23

                            
Query: 61 tgtggggttgggcgtgga 78
           ||| |||||||||||||
Sbjct: 22 cgtgaggttgggcgtgga 5




>52017_ptc-miRf10195-akr:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                      
Query: 1  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
          ||||||||||||||| |||||||| ||| ||  |||||||   | |||||  ||||| ||
Sbjct: 82 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 23

                            
Query: 61 tgtggggttgggcgtgga 78
           ||| |||||||||||||
Sbjct: 22 cgtgaggttgggcgtgga 5




>52016_ptc-miRf10194-akr:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                      
Query: 1  gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
          ||||||||||||||| |||||||| ||| ||  |||||||   | |||||  ||||| ||
Sbjct: 82 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 23

                            
Query: 61 tgtggggttgggcgtgga 78
           ||| |||||||||||||
Sbjct: 22 cgtgaggttgggcgtgga 5




>51873_ptc-miRf10051-akr:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 59  aatgtggggttgggcgtggacgcgtc 84
           ||||||||||||||||||||| ||||
Sbjct: 76  aatgtggggttgggcgtggacacgtc 101




>53668_ptc-miRf11846-akr:pmrd
          Length = 107

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  ttgggcgtggacgcgtccagg 22
          |||||||||||||||||||||
Sbjct: 10 ttgggcgtggacgcgtccagg 30




>52764_ptc-miRf10942-akr:pmrd
          Length = 119

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 6   gcgtggacgcgtccaggtctaacgtggggttgg 38
           ||||||||||||||||||| ||| ||| |||||
Sbjct: 100 gcgtggacgcgtccaggtccaacatggagttgg 68




>52198_ptc-miRf10376-akr:pmrd
          Length = 111

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 16 gtccaggtctaacgtggggttgggc 40
          ||||||||| |||||||||||||||
Sbjct: 74 gtccaggtccaacgtggggttgggc 98




>51865_ptc-miRf10043-akr:pmrd
          Length = 108

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                           
Query: 6  gcgtggacgcgtccaggtctaacgtggggttgg 38
          ||||||||||||||||||| ||| ||| |||||
Sbjct: 96 gcgtggacgcgtccaggtccaacatggagttgg 64




>51864_ptc-miRf10042-akr:pmrd
          Length = 104

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                           
Query: 6  gcgtggacgcgtccaggtctaacgtggggttgg 38
          ||||||||||||||||||| ||| ||| |||||
Sbjct: 94 gcgtggacgcgtccaggtccaacatggagttgg 62




>53733_ptc-miRf11911-akr:pmrd
          Length = 81

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gttgggcgtggacgcgtcca 20
          ||||||||||||||||||||
Sbjct: 11 gttgggcgtggacgcgtcca 30




>53732_ptc-miRf11910-akr:pmrd
          Length = 81

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gttgggcgtggacgcgtcca 20
          ||||||||||||||||||||
Sbjct: 11 gttgggcgtggacgcgtcca 30




>53057_ptc-miRf11235-akr:pmrd
          Length = 93

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 62 gtggggttgggcgtggacgc 81
          ||||||||||||||||||||
Sbjct: 31 gtggggttgggcgtggacgc 50




>53056_ptc-miRf11234-akr:pmrd
          Length = 93

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 62 gtggggttgggcgtggacgc 81
          ||||||||||||||||||||
Sbjct: 31 gtggggttgggcgtggacgc 50




>53050_ptc-miRf11228-akr:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 53 agacctaatgtggggttgggcgtggacgcgtc 84
          ||||| || |||||||||||| ||||||||||
Sbjct: 5  agacccaacgtggggttgggcatggacgcgtc 36




>53049_ptc-miRf11227-akr:pmrd
          Length = 147

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 53 agacctaatgtggggttgggcgtggacgcgtc 84
          ||||| || |||||||||||| ||||||||||
Sbjct: 14 agacccaacgtggggttgggcatggacgcgtc 45




>52011_ptc-miRf10189-akr:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 64 ggggttgggcgtggacgcgtctag 87
          |||||||||||||||| |||||||
Sbjct: 16 ggggttgggcgtggacacgtctag 39




>51936_ptc-miRf10114-akr:pmrd
          Length = 83

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 63 tggggttgggcgtggacgcg 82
          ||||||||||||||||||||
Sbjct: 27 tggggttgggcgtggacgcg 8