miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52427_ptc-miRf10605-akr:pmrd
Length = 116
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 71
Query: 61 tgtggggttgggcgtggacgcgtctaggtacaac 94
||||||||||||||||||||||||||||||||||
Sbjct: 72 tgtggggttgggcgtggacgcgtctaggtacaac 105
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 atgtggggttgggcgtggacgcgtctaggt 89
||||||||||||||||||||||||| ||||
Sbjct: 5 atgtggggttgggcgtggacgcgtccaggt 34
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgg 38
|||||||||||||||||| |||| ||| |||||||||
Sbjct: 78 gttgggcgtggacgcgtctaggtacaacatggggttgg 115
>52426_ptc-miRf10604-akr:pmrd
Length = 160
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
Query: 61 tgtggggttgggcgtggacgcgtctaggtacaac 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtggggttgggcgtggacgcgtctaggtacaac 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
|||||||||||||||||| |||| ||| ||||||||| | | ||||| |||||| ||
Sbjct: 67 gttgggcgtggacgcgtctaggtacaacatggggttggtcggggacgcgtctagacccaa 126
Query: 61 tgtggggttgggcgtggacgcgtctaggtacaac 94
|||||||||||||||||| ||| |||| ||||
Sbjct: 127 catggggttgggcgtggacgtgtccaggtccaac 160
>53433_ptc-miRf11611-akr:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 7e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 53 agacctaatgtggggttgggcgtggacgcgtctaggtacaac 94
||||| || |||||||||||||||||||||| ||||| ||||
Sbjct: 16 agacccaacgtggggttgggcgtggacgcgtataggtccaac 57
>52751_ptc-miRf10929-akr:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 59 aatgtggggttgggcgtggacgcgtctaggtacaac 94
||||||||||||||||| || |||||||||| ||||
Sbjct: 98 aatgtggggttgggcgtagaggcgtctaggtccaac 63
>52728_ptc-miRf10906-akr:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 3 tgggcgtggacgcgtccaggtctaacgtggggttgg 38
|||||||||||||||||||||| ||| | |||||||
Sbjct: 1 tgggcgtggacgcgtccaggtccaacatagggttgg 36
>52009_ptc-miRf10187-akr:pmrd
Length = 113
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtc 24
||||||||||||||||||||||||
Sbjct: 11 gttgggcgtggacgcgtccaggtc 34
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 65 gggttgggcgtggacgcgtctaggtacaac 94
|||||||||||||||||||| |||| ||||
Sbjct: 9 gggttgggcgtggacgcgtccaggtccaac 38
>54019_ptc-miRf12197-akr:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttggg 39
|||||||| ||||||||||||||| ||| || |||||||
Sbjct: 45 gttgggcgcggacgcgtccaggtccaacatgtggttggg 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 53 agacctaatgtggggttgggcgtggacgcgtctaggtacaac 94
||||| || ||||||||||||| ||||||||| |||| ||||
Sbjct: 31 agacccaacgtggggttgggcgcggacgcgtccaggtccaac 72
>54323_ptc-miRf12501-akr:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 6 gcgtggacgcgtccaggtctaacgtggggttggg 39
||||||||||||||||||| ||| ||| ||||||
Sbjct: 1 gcgtggacgcgtccaggtccaacatggagttggg 34
>53953_ptc-miRf12131-akr:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccagg 22
||||||||||||||||||||||
Sbjct: 14 gttgggcgtggacgcgtccagg 35
>53932_ptc-miRf12110-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
||||||||||||||| |||||||| ||| || ||||||| | ||||| ||||| ||
Sbjct: 1 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 60
Query: 61 tgtggggttgggcgtgga 78
||| |||||||||||||
Sbjct: 61 cgtgaggttgggcgtgga 78
>53931_ptc-miRf12109-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
||||||||||||||| |||||||| ||| || ||||||| | ||||| ||||| ||
Sbjct: 1 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 60
Query: 61 tgtggggttgggcgtgga 78
||| |||||||||||||
Sbjct: 61 cgtgaggttgggcgtgga 78
>53930_ptc-miRf12108-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
||||||||||||||| |||||||| ||| || ||||||| | ||||| ||||| ||
Sbjct: 1 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 60
Query: 61 tgtggggttgggcgtgga 78
||| |||||||||||||
Sbjct: 61 cgtgaggttgggcgtgga 78
>53929_ptc-miRf12107-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
||||||||||||||| |||||||| ||| || ||||||| | ||||| ||||| ||
Sbjct: 1 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 60
Query: 61 tgtggggttgggcgtgga 78
||| |||||||||||||
Sbjct: 61 cgtgaggttgggcgtgga 78
>53021_ptc-miRf11199-akr:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 19 caggtctaacgtggggttgggcattgtcgcgtttagacctaatgtggggttgggcgtg 76
|||||| ||| ||| ||||| | | ||||||| |||||| |||||||||||| |||||
Sbjct: 55 caggtccaacatggcgttggacgtggtcgcgtctagacccaatgtggggttgtgcgtg 112
>52787_ptc-miRf10965-akr:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3 tgggcgtggacgcgtccaggtc 24
||||||||||||||||||||||
Sbjct: 28 tgggcgtggacgcgtccaggtc 7
>52786_ptc-miRf10964-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3 tgggcgtggacgcgtccaggtc 24
||||||||||||||||||||||
Sbjct: 29 tgggcgtggacgcgtccaggtc 8
>52425_ptc-miRf10603-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 aatgtggggttgggcgtggacgcgtc 84
||||||||||||||||||||| ||||
Sbjct: 76 aatgtggggttgggcgtggacacgtc 101
>52301_ptc-miRf10479-akr:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 44 gtcgcgtttagacctaatgtggggttgggcgtggacgcgtctaggt 89
||||||| ||| || || ||||||||||| ||||||||||| ||||
Sbjct: 40 gtcgcgtctaggcccaaagtggggttgggtgtggacgcgtccaggt 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtccaggtc 24
|||||| |||||||||||||||||
Sbjct: 63 gttgggtgtggacgcgtccaggtc 86
>52019_ptc-miRf10197-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
||||||||||||||| |||||||| ||| || ||||||| | ||||| ||||| ||
Sbjct: 82 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 23
Query: 61 tgtggggttgggcgtgga 78
||| |||||||||||||
Sbjct: 22 cgtgaggttgggcgtgga 5
>52018_ptc-miRf10196-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
||||||||||||||| |||||||| ||| || ||||||| | ||||| ||||| ||
Sbjct: 82 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 23
Query: 61 tgtggggttgggcgtgga 78
||| |||||||||||||
Sbjct: 22 cgtgaggttgggcgtgga 5
>52017_ptc-miRf10195-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
||||||||||||||| |||||||| ||| || ||||||| | ||||| ||||| ||
Sbjct: 82 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 23
Query: 61 tgtggggttgggcgtgga 78
||| |||||||||||||
Sbjct: 22 cgtgaggttgggcgtgga 5
>52016_ptc-miRf10194-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 1 gttgggcgtggacgcgtccaggtctaacgtggggttgggcattgtcgcgtttagacctaa 60
||||||||||||||| |||||||| ||| || ||||||| | ||||| ||||| ||
Sbjct: 82 gttgggcgtggacgcatccaggtccaacatgcagttgggcgaagacgcgtccagacccaa 23
Query: 61 tgtggggttgggcgtgga 78
||| |||||||||||||
Sbjct: 22 cgtgaggttgggcgtgga 5
>51873_ptc-miRf10051-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 aatgtggggttgggcgtggacgcgtc 84
||||||||||||||||||||| ||||
Sbjct: 76 aatgtggggttgggcgtggacacgtc 101
>53668_ptc-miRf11846-akr:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 ttgggcgtggacgcgtccagg 22
|||||||||||||||||||||
Sbjct: 10 ttgggcgtggacgcgtccagg 30
>52764_ptc-miRf10942-akr:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 6 gcgtggacgcgtccaggtctaacgtggggttgg 38
||||||||||||||||||| ||| ||| |||||
Sbjct: 100 gcgtggacgcgtccaggtccaacatggagttgg 68
>52198_ptc-miRf10376-akr:pmrd
Length = 111
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 gtccaggtctaacgtggggttgggc 40
||||||||| |||||||||||||||
Sbjct: 74 gtccaggtccaacgtggggttgggc 98
>51865_ptc-miRf10043-akr:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 6 gcgtggacgcgtccaggtctaacgtggggttgg 38
||||||||||||||||||| ||| ||| |||||
Sbjct: 96 gcgtggacgcgtccaggtccaacatggagttgg 64
>51864_ptc-miRf10042-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 6 gcgtggacgcgtccaggtctaacgtggggttgg 38
||||||||||||||||||| ||| ||| |||||
Sbjct: 94 gcgtggacgcgtccaggtccaacatggagttgg 62
>53733_ptc-miRf11911-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtcca 20
||||||||||||||||||||
Sbjct: 11 gttgggcgtggacgcgtcca 30
>53732_ptc-miRf11910-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gttgggcgtggacgcgtcca 20
||||||||||||||||||||
Sbjct: 11 gttgggcgtggacgcgtcca 30
>53057_ptc-miRf11235-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 gtggggttgggcgtggacgc 81
||||||||||||||||||||
Sbjct: 31 gtggggttgggcgtggacgc 50
>53056_ptc-miRf11234-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 gtggggttgggcgtggacgc 81
||||||||||||||||||||
Sbjct: 31 gtggggttgggcgtggacgc 50
>53050_ptc-miRf11228-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 53 agacctaatgtggggttgggcgtggacgcgtc 84
||||| || |||||||||||| ||||||||||
Sbjct: 5 agacccaacgtggggttgggcatggacgcgtc 36
>53049_ptc-miRf11227-akr:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 53 agacctaatgtggggttgggcgtggacgcgtc 84
||||| || |||||||||||| ||||||||||
Sbjct: 14 agacccaacgtggggttgggcatggacgcgtc 45
>52011_ptc-miRf10189-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 ggggttgggcgtggacgcgtctag 87
|||||||||||||||| |||||||
Sbjct: 16 ggggttgggcgtggacacgtctag 39
>51936_ptc-miRf10114-akr:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 63 tggggttgggcgtggacgcg 82
||||||||||||||||||||
Sbjct: 27 tggggttgggcgtggacgcg 8
