miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53008_ptc-miRf11186-akr:pmrd
Length = 166
Score = 71.9 bits (36), Expect = 6e-14
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 17 ttgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgc 68
|||||||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct: 162 ttgtgattcgctgccgaaactaagttgtctgcagcgaattagctttcgctgc 111
Score = 46.1 bits (23), Expect = 3e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 17 ttgtgattcgctgccgaaaccgagttgtctgccgcgaat 55
||||||||| ||| |||||| ||||||||||| ||||||
Sbjct: 47 ttgtgattcactgtcgaaactgagttgtctgcagcgaat 9
>52564_ptc-miRf10742-akr:pmrd
Length = 112
Score = 63.9 bits (32), Expect = 1e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 15 aattgtgattcgctgccgaaaccgagttgtctgccgcgaa 54
|||||||||||||||||||||| ||||||||||| |||||
Sbjct: 50 aattgtgattcgctgccgaaactgagttgtctgcagcgaa 89
>53359_ptc-miRf11537-akr:pmrd
Length = 114
Score = 56.0 bits (28), Expect = 4e-09
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 15 aattgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgct 66
||||||||||||||||||||| ||||||||||| | ||| ||| |||||||
Sbjct: 17 aattgtgattcgctgccgaaattgagttgtctgcagtgaaacagttttcgct 68
>54055_ptc-miRf12233-akr:pmrd
Length = 113
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 22 attcgctgccgaaaccgagttgtctgccgcgaat 55
||||||||||||||| ||||||||||| ||||||
Sbjct: 60 attcgctgccgaaactgagttgtctgcagcgaat 93
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ttgtgattcgctgccgaaac 36
||||||||||||||||||||
Sbjct: 94 ttgtgattcgctgccgaaac 113
>53610_ptc-miRf11788-akr:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 gttgtctgccgcgaatcagctttcgctgcc 69
||||||||| ||||||||||||||||||||
Sbjct: 42 gttgtctgcagcgaatcagctttcgctgcc 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 23 ttcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgccaaaagtg 76
||||||||||||| |||||||||| |||||| ||| ||||||| | ||||||
Sbjct: 63 ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaaagtg 116
>52815_ptc-miRf10993-akr:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 40 gttgtctgccgcgaatcagctttcgctgcc 69
||||||||| ||||||||||||||||||||
Sbjct: 42 gttgtctgcagcgaatcagctttcgctgcc 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 23 ttcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgccaaaagtg 76
||||||||||||| |||||||||| |||||| ||| ||||||| | ||||||
Sbjct: 63 ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaaagtg 116
>52783_ptc-miRf10961-akr:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 6e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 15 aattgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgc 68
|||||||||| ||||||||||| ||||| ||||| | |||| ||| ||||||||
Sbjct: 11 aattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcgctgc 64
>52242_ptc-miRf10420-akr:pmrd
Length = 144
Score = 52.0 bits (26), Expect = 6e-08
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 15 aattgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgc 68
||||||||||||||||||||| |||||| ||| |||||| ||| ||||||||
Sbjct: 88 aattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141
>52150_ptc-miRf10328-akr:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 6e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 22 attcgctgccgaaaccgagttgtctgccgcgaat 55
||||||||||||||| ||||||||||| ||||||
Sbjct: 14 attcgctgccgaaacggagttgtctgcagcgaat 47
>52355_ptc-miRf10533-akr:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 9e-07
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 22 attcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgcc 69
||||||||||||||| |||| ||||| |||||| ||| |||||||||
Sbjct: 60 attcgctgccgaaactgagtcttctgcagcgaattagcattcgctgcc 107
>52207_ptc-miRf10385-akr:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 9e-07
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 22 attcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgcc 69
||||||||||||||| |||| ||||| |||||| ||| |||||||||
Sbjct: 60 attcgctgccgaaactgagtcttctgcagcgaattagcattcgctgcc 107
>54315_ptc-miRf12493-akr:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 aattgtgattcgctgccgaaaccgagt 41
|||||||||||||||||||||| ||||
Sbjct: 57 aattgtgattcgctgccgaaactgagt 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 38 gagttgtctgccgcgaatcagctttcgctgcc 69
||||||||||| |||||| ||| |||||||||
Sbjct: 4 gagttgtctgcagcgaattagcattcgctgcc 35
>53975_ptc-miRf12153-akr:pmrd
Length = 75
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aattgtgattcgctgccgaaac 36
||||||||||||||||||||||
Sbjct: 53 aattgtgattcgctgccgaaac 74
>53970_ptc-miRf12148-akr:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aattgtgattcgctgccgaaac 36
||||||||||||||||||||||
Sbjct: 13 aattgtgattcgctgccgaaac 34
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 38 gagttgtctgccgcgaatcagctttcgctgcc 69
||||||||||| ||||| ||| ||||||||||
Sbjct: 74 gagttgtctgcagcgaaccagttttcgctgcc 105
>53387_ptc-miRf11565-akr:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aattgtgattcgctgccgaaac 36
||||||||||||||||||||||
Sbjct: 13 aattgtgattcgctgccgaaac 34
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 38 gagttgtctgccgcgaatcagctttcgctgcc 69
||||||||||| ||||| ||| ||||||||||
Sbjct: 74 gagttgtctgcagcgaaccagttttcgctgcc 105
>54011_ptc-miRf12189-akr:pmrd
Length = 158
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 ttgtgattcgctgccgaaaccgagt 41
|||||||||||||||||||| ||||
Sbjct: 134 ttgtgattcgctgccgaaactgagt 158
Score = 40.1 bits (20), Expect = 2e-04
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 18 tgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgcc 69
||||||||||||||||||| | || | |||| || ||| ||| |||||||||
Sbjct: 60 tgtgattcgctgccgaaactgcgtcggctgcagcaaattagcattcgctgcc 111