miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>53008_ptc-miRf11186-akr:pmrd
          Length = 166

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                               
Query: 17  ttgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgc 68
           ||||||||||||||||||||  |||||||||| |||||| ||||||||||||
Sbjct: 162 ttgtgattcgctgccgaaactaagttgtctgcagcgaattagctttcgctgc 111



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                 
Query: 17 ttgtgattcgctgccgaaaccgagttgtctgccgcgaat 55
          ||||||||| ||| |||||| ||||||||||| ||||||
Sbjct: 47 ttgtgattcactgtcgaaactgagttgtctgcagcgaat 9




>52564_ptc-miRf10742-akr:pmrd
          Length = 112

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 15 aattgtgattcgctgccgaaaccgagttgtctgccgcgaa 54
          |||||||||||||||||||||| ||||||||||| |||||
Sbjct: 50 aattgtgattcgctgccgaaactgagttgtctgcagcgaa 89




>53359_ptc-miRf11537-akr:pmrd
          Length = 114

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                              
Query: 15 aattgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgct 66
          |||||||||||||||||||||  ||||||||||| | ||| ||| |||||||
Sbjct: 17 aattgtgattcgctgccgaaattgagttgtctgcagtgaaacagttttcgct 68




>54055_ptc-miRf12233-akr:pmrd
          Length = 113

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 22 attcgctgccgaaaccgagttgtctgccgcgaat 55
          ||||||||||||||| ||||||||||| ||||||
Sbjct: 60 attcgctgccgaaactgagttgtctgcagcgaat 93



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 17  ttgtgattcgctgccgaaac 36
           ||||||||||||||||||||
Sbjct: 94  ttgtgattcgctgccgaaac 113




>53610_ptc-miRf11788-akr:pmrd
          Length = 118

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 40 gttgtctgccgcgaatcagctttcgctgcc 69
          ||||||||| ||||||||||||||||||||
Sbjct: 42 gttgtctgcagcgaatcagctttcgctgcc 71



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 23  ttcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgccaaaagtg 76
           |||||||||||||  ||||||||||  |||||| ||| ||||||| | ||||||
Sbjct: 63  ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaaagtg 116




>52815_ptc-miRf10993-akr:pmrd
          Length = 118

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 40 gttgtctgccgcgaatcagctttcgctgcc 69
          ||||||||| ||||||||||||||||||||
Sbjct: 42 gttgtctgcagcgaatcagctttcgctgcc 71



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 23  ttcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgccaaaagtg 76
           |||||||||||||  ||||||||||  |||||| ||| ||||||| | ||||||
Sbjct: 63  ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaaagtg 116




>52783_ptc-miRf10961-akr:pmrd
          Length = 103

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                
Query: 15 aattgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgc 68
          |||||||||| ||||||||||| ||||| ||||| | |||| ||| ||||||||
Sbjct: 11 aattgtgatttgctgccgaaactgagttctctgcagtgaattagcattcgctgc 64




>52242_ptc-miRf10420-akr:pmrd
          Length = 144

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 15  aattgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgc 68
           |||||||||||||||||||||  ||||||  ||| |||||| ||| ||||||||
Sbjct: 88  aattgtgattcgctgccgaaattgagttgcatgcagcgaattagcattcgctgc 141




>52150_ptc-miRf10328-akr:pmrd
          Length = 99

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 22 attcgctgccgaaaccgagttgtctgccgcgaat 55
          ||||||||||||||| ||||||||||| ||||||
Sbjct: 14 attcgctgccgaaacggagttgtctgcagcgaat 47




>52355_ptc-miRf10533-akr:pmrd
          Length = 112

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 22  attcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgcc 69
           ||||||||||||||| ||||  ||||| |||||| ||| |||||||||
Sbjct: 60  attcgctgccgaaactgagtcttctgcagcgaattagcattcgctgcc 107




>52207_ptc-miRf10385-akr:pmrd
          Length = 112

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 22  attcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgcc 69
           ||||||||||||||| ||||  ||||| |||||| ||| |||||||||
Sbjct: 60  attcgctgccgaaactgagtcttctgcagcgaattagcattcgctgcc 107




>54315_ptc-miRf12493-akr:pmrd
          Length = 83

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 15 aattgtgattcgctgccgaaaccgagt 41
          |||||||||||||||||||||| ||||
Sbjct: 57 aattgtgattcgctgccgaaactgagt 83



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 38 gagttgtctgccgcgaatcagctttcgctgcc 69
          ||||||||||| |||||| ||| |||||||||
Sbjct: 4  gagttgtctgcagcgaattagcattcgctgcc 35




>53975_ptc-miRf12153-akr:pmrd
          Length = 75

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 aattgtgattcgctgccgaaac 36
          ||||||||||||||||||||||
Sbjct: 53 aattgtgattcgctgccgaaac 74




>53970_ptc-miRf12148-akr:pmrd
          Length = 109

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 aattgtgattcgctgccgaaac 36
          ||||||||||||||||||||||
Sbjct: 13 aattgtgattcgctgccgaaac 34



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 38  gagttgtctgccgcgaatcagctttcgctgcc 69
           ||||||||||| ||||| ||| ||||||||||
Sbjct: 74  gagttgtctgcagcgaaccagttttcgctgcc 105




>53387_ptc-miRf11565-akr:pmrd
          Length = 109

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 aattgtgattcgctgccgaaac 36
          ||||||||||||||||||||||
Sbjct: 13 aattgtgattcgctgccgaaac 34



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 38  gagttgtctgccgcgaatcagctttcgctgcc 69
           ||||||||||| ||||| ||| ||||||||||
Sbjct: 74  gagttgtctgcagcgaaccagttttcgctgcc 105




>54011_ptc-miRf12189-akr:pmrd
          Length = 158

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 17  ttgtgattcgctgccgaaaccgagt 41
           |||||||||||||||||||| ||||
Sbjct: 134 ttgtgattcgctgccgaaactgagt 158



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 18  tgtgattcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgcc 69
           ||||||||||||||||||| | || | |||| || ||| ||| |||||||||
Sbjct: 60  tgtgattcgctgccgaaactgcgtcggctgcagcaaattagcattcgctgcc 111