miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51831_ptc-miRf10009-akr:pmrd
Length = 99
Score = 125 bits (63), Expect = 7e-30
Identities = 88/95 (92%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 7 gaaaaaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccg 66
|||||||||||||||||||||||||||| ||||| |||||||||||||||||| || |
Sbjct: 3 gaaaaaaccgagccaaaccggtttgaacctgttttg-tcctaaaaaaccgaaccgaactg 61
Query: 67 aaaccggtcggtttgaaccggtttcggttcggttt 101
|||||||| ||||||||||||||||||||||||||
Sbjct: 62 aaaccggttggtttgaaccggtttcggttcggttt 96
>51868_ptc-miRf10046-akr:pmrd
Length = 97
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 7 gaaaaaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccg 66
||||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||
Sbjct: 13 gaaaaaaccgagccaaacctgtttgaaccggtttttgtcctaaaaaaccga-----accg 67
Query: 67 aaaccggtcggtttgaaccggtttcggtt 95
|| |||| |||||||||||||||||||||
Sbjct: 68 aacccggccggtttgaaccggtttcggtt 96
>53823_ptc-miRf12001-akr:pmrd
Length = 124
Score = 95.6 bits (48), Expect = 6e-21
Identities = 90/104 (86%), Gaps = 5/104 (4%)
Strand = Plus / Minus
Query: 10 aaaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggac----- 64
|||||||||||||||||||||||| ||||||| |||||||||||||| || ||
Sbjct: 104 aaaaccgagccaaaccggtttgaatcggtttttgccctaaaaaaccgaatcgaactgcac 45
Query: 65 cgaaaccggtcggtttgaaccggtttcggttcggtttaggtttt 108
||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 44 cgaaaccagtcggtttgacccggtttcggttcggtttcggtttt 1
>52274_ptc-miRf10452-akr:pmrd
Length = 147
Score = 93.7 bits (47), Expect = 2e-20
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand = Plus / Plus
Query: 7 gaaaaaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccg 66
|||||||||||||||||| ||||||||| |||||| |||||||||||||| ||||
Sbjct: 48 gaaaaaaccgagccaaacaggtttgaacctgtttttgtcctaaaaaaccga-----accg 102
Query: 67 aaaccggtcggtttgaaccggtttcggttcggttt 101
||||| | |||||||||||||||| ||||||||||
Sbjct: 103 aaaccagccggtttgaaccggttttggttcggttt 137
>53838_ptc-miRf12016-akr:pmrd
Length = 127
Score = 91.7 bits (46), Expect = 1e-19
Identities = 83/94 (88%), Gaps = 6/94 (6%)
Strand = Plus / Minus
Query: 8 aaaaaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccga 67
|||||| ||||||||||| |||||||||||||||| ||||||||||| || |||||
Sbjct: 92 aaaaaaacgagccaaaccagtttgaactggttttt-tcctaaaaaactga-----accga 39
Query: 68 aaccggtcggtttgaaccggtttcggttcggttt 101
||| |||||||||||||||||||||||||||||
Sbjct: 38 aactagtcggtttgaaccggtttcggttcggttt 5
>53948_ptc-miRf12126-akr:pmrd
Length = 158
Score = 89.7 bits (45), Expect = 4e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 8 aaaaaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccga 67
||||||||||||||||||||||||||| ||||||| || |||||||| ||||| | |||
Sbjct: 86 aaaaaaccgagccaaaccggtttgaaccggtttttgtcttaaaaaactaaaccgaatcga 145
Query: 68 aaccggtcggttt 80
|||||||||||||
Sbjct: 146 aaccggtcggttt 158
>53731_ptc-miRf11909-akr:pmrd
Length = 74
Score = 89.7 bits (45), Expect = 4e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 52 aaccgaaccggaccgaaaccggtcggtttgaaccggtttcggttcggtttaggtttt 108
|||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 11 aaccgaaccgaaccgaaactggtcggtttgaaccggtttcggttcggtttcggtttt 67
>53395_ptc-miRf11573-akr:pmrd
Length = 74
Score = 89.7 bits (45), Expect = 4e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 52 aaccgaaccggaccgaaaccggtcggtttgaaccggtttcggttcggtttaggtttt 108
|||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 11 aaccgaaccgaaccgaaactggtcggtttgaaccggtttcggttcggtttcggtttt 67
>52446_ptc-miRf10624-akr:pmrd
Length = 158
Score = 89.7 bits (45), Expect = 4e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 8 aaaaaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccga 67
||||||||||||||||||||||||||| ||||||| || |||||||| ||||| | |||
Sbjct: 86 aaaaaaccgagccaaaccggtttgaaccggtttttgtcttaaaaaactaaaccgaatcga 145
Query: 68 aaccggtcggttt 80
|||||||||||||
Sbjct: 146 aaccggtcggttt 158
>52373_ptc-miRf10551-akr:pmrd
Length = 108
Score = 87.7 bits (44), Expect = 2e-18
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 12 aaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccgaaacc 71
||||||||||||||||||||||| |||||||| |||||||||| |||||| ||| |||||
Sbjct: 108 aaccgagccaaaccggtttgaaccggtttttaccctaaaaaacagaaccgaaccaaaacc 49
Query: 72 ggtc 75
||||
Sbjct: 48 ggtc 45
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 1 aaaaccgaaaaaaccgagccaaaccggtttga 32
|||||||| |||||||||||||||||||||||
Sbjct: 39 aaaaccgagaaaaccgagccaaaccggtttga 8
>53947_ptc-miRf12125-akr:pmrd
Length = 75
Score = 83.8 bits (42), Expect = 2e-17
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 55 cgaaccggaccgaaaccggtcggtttgaaccggtttcggttcggtttaggtttt 108
||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 14 cgaaccgaaccgaaaccagtcggtttgaaccggtttcggttcggtttcggtttt 67
>52886_ptc-miRf11064-akr:pmrd
Length = 144
Score = 77.8 bits (39), Expect = 1e-15
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 11 aaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccgaaac 70
||||| ||||||||| | |||||| ||||||| |||||||||||||||||| || |||||
Sbjct: 75 aaaccaagccaaaccagcttgaaccggtttttgtcctaaaaaaccgaaccgaacagaaac 16
Query: 71 cggtcggtttgaacc 85
||||| |||| ||||
Sbjct: 15 cggtcagtttaaacc 1
>54220_ptc-miRf12398-akr:pmrd
Length = 69
Score = 73.8 bits (37), Expect = 2e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 52 aaccgaaccggaccgaaaccggtcggtttgaaccggtttcggttcggtttaggtttt 108
|||||||||| |||||||| ||||||||||| ||||||||||||||| || ||||||
Sbjct: 8 aaccgaaccgaaccgaaactggtcggtttgacccggtttcggttcggattcggtttt 64
>52857_ptc-miRf11035-akr:pmrd
Length = 66
Score = 67.9 bits (34), Expect = 1e-12
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 2 aaaccgaaaaaaccgagccaaaccggtttgaactggtttttatcct 47
|||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct: 48 aaaccggaaaaaccgagccaaaccggtttgaaccggtttttgtcct 3
>51988_ptc-miRf10166-akr:pmrd
Length = 154
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 7 gaaaaaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccg 66
||||||||| || ||||||||||||||| ||||| | |||||||||| ||||| ||||
Sbjct: 81 gaaaaaaccaagtcaaaccggtttgaaccggtttctgctctaaaaaaccaaaccgaaccg 140
Query: 67 aaaccggtcggttt 80
|||| |||||||||
Sbjct: 141 aaactggtcggttt 154
>53849_ptc-miRf12027-akr:pmrd
Length = 91
Score = 65.9 bits (33), Expect = 6e-12
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 25 cggtttgaactggtttttatcctaaaa-aaccgaaccggaccgaaaccggtcggtttgaa 83
|||||||||||||||||| | |||||| ||| ||||| || ||||||||||||||||||
Sbjct: 17 cggtttgaactggtttttgttctaaaataactgaaccaaacagaaaccggtcggtttgaa 76
Query: 84 ccggtttcg 92
| |||||||
Sbjct: 77 ctggtttcg 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 accgaaaccggtcggtttgaaccggttt 90
|||||||||||||||||||||| |||||
Sbjct: 5 accgaaaccggtcggtttgaactggttt 32
>53654_ptc-miRf11832-akr:pmrd
Length = 123
Score = 65.9 bits (33), Expect = 6e-12
Identities = 76/91 (83%), Gaps = 12/91 (13%)
Strand = Plus / Minus
Query: 11 aaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccgaaac 70
||||||||||||||| |||||||| ||||||| |||||||||| |||||
Sbjct: 81 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaa-----------cgaaa- 34
Query: 71 cggtcggtttgaaccggtttcggttcggttt 101
|||||||||||||||||||||||||||||||
Sbjct: 33 cggtcggtttgaaccggtttcggttcggttt 3
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 2 aaaccgaaaaaaccgagccaaaccg 26
|||||||||||| ||||||||||||
Sbjct: 100 aaaccgaaaaaatcgagccaaaccg 76
>52930_ptc-miRf11108-akr:pmrd
Length = 79
Score = 65.9 bits (33), Expect = 6e-12
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 52 aaccgaaccggaccgaaaccggtcggtttgaaccggtttcggttcggtttaggtttt 108
|||||||||| |||||||| | | |||||||||||||||||||||||||| ||||||
Sbjct: 22 aaccgaaccgaaccgaaactgtt-ggtttgaaccggtttcggttcggtttcggtttt 77
>51851_ptc-miRf10029-akr:pmrd
Length = 79
Score = 65.9 bits (33), Expect = 6e-12
Identities = 76/91 (83%), Gaps = 12/91 (13%)
Strand = Plus / Plus
Query: 11 aaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccgaaac 70
||||||||||||||| |||||||| ||||||| |||||||||| |||||
Sbjct: 1 aaaccgagccaaaccagtttgaaccggtttttgtcctaaaaaa-----------cgaaa- 48
Query: 71 cggtcggtttgaaccggtttcggttcggttt 101
|||||||||||||||||||||||||||||||
Sbjct: 49 cggtcggtttgaaccggtttcggttcggttt 79
>53431_ptc-miRf11609-akr:pmrd
Length = 60
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 7 gaaaaaaccgagccaaaccggtttgaactggttttt 42
|||||||||||||||||||||||||||| |||||||
Sbjct: 39 gaaaaaaccgagccaaaccggtttgaaccggttttt 4
>52338_ptc-miRf10516-akr:pmrd
Length = 136
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 57 aaccggaccgaaaccggtcggtttgaaccggtttcg 92
||||| ||||||||||||||||||||||||||||||
Sbjct: 93 aaccgaaccgaaaccggtcggtttgaaccggtttcg 128
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 accgaaaccggtcggtttgaaccggttt 90
||||||||||||| ||||||||||||||
Sbjct: 7 accgaaaccggtcagtttgaaccggttt 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 57 aaccggaccgaaaccggtcggtttgaac 84
||||| ||| ||||||||||||||||||
Sbjct: 47 aaccgaaccaaaaccggtcggtttgaac 74
>53432_ptc-miRf11610-akr:pmrd
Length = 82
Score = 60.0 bits (30), Expect = 3e-10
Identities = 61/71 (85%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 25 cggtttgaactggtttttatcctaaaaaaccgaaccggaccgaaaccggtcggtttgaac 84
|||||||||||||||||| | |||||| | || | ||||||||||||||||||||||
Sbjct: 15 cggtttgaactggtttttgttctaaaata----actgaaccgaaaccggtcggtttgaac 70
Query: 85 cggtttcggtt 95
| |||||||||
Sbjct: 71 cagtttcggtt 81
>54327_ptc-miRf12505-akr:pmrd
Length = 143
Score = 56.0 bits (28), Expect = 5e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 21 aaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccgaa 68
|||||||||||||| ||||||| |||||||||||| || || ||||||
Sbjct: 8 aaaccggtttgaaccggtttttgtcctaaaaaaccaaatcgaaccgaa 55
>53928_ptc-miRf12106-akr:pmrd
Length = 137
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 8 aaaaaaccgagccaaaccggtttgaactggttttt 42
||||||||||| ||||||||||||||| |||||||
Sbjct: 72 aaaaaaccgagtcaaaccggtttgaaccggttttt 38
>52512_ptc-miRf10690-akr:pmrd
Length = 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 52 aaccgaaccggaccgaaaccggtcggtttgaaccg 86
|||||||||| |||||||||| |||||||||||||
Sbjct: 22 aaccgaaccgaaccgaaaccgatcggtttgaaccg 56
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 accgaaaccggtcggtttgaaccg 86
||||||||||||||||||||||||
Sbjct: 3 accgaaaccggtcggtttgaaccg 26
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 gaaccggaccgaaaccggtcggtttgaaccg 86
|||||| ||| ||||||||||||||||||||
Sbjct: 51 gaaccgaaccaaaaccggtcggtttgaaccg 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 gaaccggaccgaaaccggtcggtttgaaccg 86
|||||| ||||||||||||| ||||||||||
Sbjct: 76 gaaccgaaccgaaaccggtcagtttgaaccg 106
>53625_ptc-miRf11803-akr:pmrd
Length = 152
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 2 aaaccgaaaaaaccgagccaaaccgg 27
||||||||||||||||||||||||||
Sbjct: 69 aaaccgaaaaaaccgagccaaaccgg 44
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 57 aaccggaccgaaaccggtcggtttgaacc 85
||||| |||||||||||||||||||||||
Sbjct: 29 aaccgaaccgaaaccggtcggtttgaacc 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7 gaaaaaaccgagccaaaccg 26
||||||||||||||||||||
Sbjct: 44 gaaaaaaccgagccaaaccg 25
>53113_ptc-miRf11291-akr:pmrd
Length = 77
Score = 52.0 bits (26), Expect = 8e-08
Identities = 68/82 (82%), Gaps = 5/82 (6%)
Strand = Plus / Minus
Query: 10 aaaaccgagccaaaccggtttgaactggtttttatcctaaaaaaccgaaccggaccgaaa 69
|||||| || ||||||| | ||||| |||||| |||||||||||||| |||||||
Sbjct: 77 aaaaccaagtcaaaccgatctgaaccggttttggtcctaaaaaaccga-----accgaaa 23
Query: 70 ccggtcggtttgaaccggtttc 91
||| ||||||||| ||||||||
Sbjct: 22 ccgatcggtttgacccggtttc 1
>53451_ptc-miRf11629-akr:pmrd
Length = 67
Score = 46.1 bits (23), Expect = 5e-06
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 1 aaaaccgaaaaaaccgagccaaa-ccggtttgaactggttttt 42
||||||| ||||||| ||||||| ||||||||||| |||||||
Sbjct: 49 aaaaccggaaaaaccaagccaaaaccggtttgaaccggttttt 7
>52182_ptc-miRf10360-akr:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 76 ggtttgaaccggtttcggttcggtttaggtttt 108
||||||| ||||||||||||||| || ||||||
Sbjct: 106 ggtttgacccggtttcggttcggattcggtttt 74
>54349_ptc-miRf12527-akr:pmrd
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 52 aaccgaaccggaccgaaaccggtcggtttgaaccgg 87
|||||||||| |||||| | | ||||||||||||||
Sbjct: 7 aaccgaaccgaaccgaaccggttcggtttgaaccgg 42
>53966_ptc-miRf12144-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 74 tcggtttgaaccgg-tttcggttcggtt 100
|||||||||||||| |||||||||||||
Sbjct: 34 tcggtttgaaccggttttcggttcggtt 61
>52550_ptc-miRf10728-akr:pmrd
Length = 142
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 34 ctggtttttatcctaaaaaaccga 57
||||||||||| ||||||||||||
Sbjct: 16 ctggtttttatgctaaaaaaccga 39
