miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53521_ptc-miRf11699-akr:pmrd
Length = 146
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1 ttatcaatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ttatcaatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttgg 81
Query: 61 aaacatggagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aaacatggagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaat 21
Query: 121 cccaacattggtaa 134
||||||||||||||
Sbjct: 20 cccaacattggtaa 7
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 5 caatgttgggatacatatcgagacttgcttaatactt 41
|||||||||||| ||||||||| ||||||||||||
Sbjct: 11 caatgttgggattggtatcgagacatgcttaatactt 47
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 94 aagtattaagcatgtctcgataccaatcccaacattg 130
|||||||||||| ||||||||| ||||||||||||
Sbjct: 100 aagtattaagcaagtctcgatatgtatcccaacattg 136
>53510_ptc-miRf11688-akr:pmrd
Length = 146
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1 ttatcaatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ttatcaatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttgg 81
Query: 61 aaacatggagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aaacatggagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaat 21
Query: 121 cccaacattggtaa 134
||||||||||||||
Sbjct: 20 cccaacattggtaa 7
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 5 caatgttgggatacatatcgagacttgcttaatactt 41
|||||||||||| ||||||||| ||||||||||||
Sbjct: 11 caatgttgggattggtatcgagacatgcttaatactt 47
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 94 aagtattaagcatgtctcgataccaatcccaacattg 130
|||||||||||| ||||||||| ||||||||||||
Sbjct: 100 aagtattaagcaagtctcgatatgtatcccaacattg 136
>52635_ptc-miRf10813-akr:pmrd
Length = 134
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1 ttatcaatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatcaatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttgg 60
Query: 61 aaacatggagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaacatggagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaat 120
Query: 121 cccaacattggtaa 134
||||||||||||||
Sbjct: 121 cccaacattggtaa 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 94 aagtattaagcatgtctcgataccaatcccaacattg 130
|||||||||||| ||||||||| ||||||||||||
Sbjct: 41 aagtattaagcaagtctcgatatgtatcccaacattg 5
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 5 caatgttgggatacatatcgagacttgcttaatactt 41
|||||||||||| ||||||||| ||||||||||||
Sbjct: 130 caatgttgggattggtatcgagacatgcttaatactt 94
>52215_ptc-miRf10393-akr:pmrd
Length = 146
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1 ttatcaatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ttatcaatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttgg 81
Query: 61 aaacatggagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aaacatggagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaat 21
Query: 121 cccaacattggtaa 134
||||||||||||||
Sbjct: 20 cccaacattggtaa 7
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 5 caatgttgggatacatatcgagacttgcttaatactt 41
|||||||||||| ||||||||| ||||||||||||
Sbjct: 11 caatgttgggattggtatcgagacatgcttaatactt 47
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 94 aagtattaagcatgtctcgataccaatcccaacattg 130
|||||||||||| ||||||||| ||||||||||||
Sbjct: 100 aagtattaagcaagtctcgatatgtatcccaacattg 136
>52204_ptc-miRf10382-akr:pmrd
Length = 146
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1 ttatcaatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ttatcaatgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttgg 81
Query: 61 aaacatggagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aaacatggagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaat 21
Query: 121 cccaacattggtaa 134
||||||||||||||
Sbjct: 20 cccaacattggtaa 7
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 5 caatgttgggatacatatcgagacttgcttaatactt 41
|||||||||||| ||||||||| ||||||||||||
Sbjct: 11 caatgttgggattggtatcgagacatgcttaatactt 47
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 94 aagtattaagcatgtctcgataccaatcccaacattg 130
|||||||||||| ||||||||| ||||||||||||
Sbjct: 100 aagtattaagcaagtctcgatatgtatcccaacattg 136
>52636_ptc-miRf10814-akr:pmrd
Length = 120
Score = 238 bits (120), Expect = 9e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 8 tgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttggaaacatg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttggaaacatg 60
Query: 68 gagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaatcccaaca 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaatcccaaca 120
>52628_ptc-miRf10806-akr:pmrd
Length = 120
Score = 238 bits (120), Expect = 9e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 8 tgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttggaaacatg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttgggatacatatcgagacttgcttaatacttgccttcatcatggttttggaaacatg 60
Query: 68 gagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaatcccaaca 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagattggtaagttagcaacattggtaagtattaagcatgtctcgataccaatcccaaca 120
>52214_ptc-miRf10392-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 5e-59
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 12 gggatacatatcgagacttgcttaatacttgccttcatcatggttttggaaacatggaga 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gggatacatatcgagacttgcttaatacttgccttcatcatggttttggaaacatggaga 53
Query: 72 ttggtaagttagcaacattggtaagtattaagcatgtctcgataccaatccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ttggtaagttagcaacattggtaagtattaagcatgtctcgataccaatccc 1
>52203_ptc-miRf10381-akr:pmrd
Length = 112
Score = 222 bits (112), Expect = 5e-59
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 12 gggatacatatcgagacttgcttaatacttgccttcatcatggttttggaaacatggaga 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gggatacatatcgagacttgcttaatacttgccttcatcatggttttggaaacatggaga 53
Query: 72 ttggtaagttagcaacattggtaagtattaagcatgtctcgataccaatccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ttggtaagttagcaacattggtaagtattaagcatgtctcgataccaatccc 1
