miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 60
Query: 61 gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 110
>51749_ptc-miR399c:pmrd
Length = 126
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 62
Query: 61 gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 12
>51748_ptc-miR399b:pmrd
Length = 126
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgccgggcaaatctcctttggcatggcgccgcactctacaggaatgcatcaagtgtta 62
Query: 61 gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatattgcgtgtcttagtggctgcatgccaatggaagcttgccctgtaat 12
>54881_vvi-miR399e:pmrd
Length = 112
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
|||||||||||||||||||||||||
Sbjct: 106 attgccgggcaaatctcctttggca 82
>51756_ptc-miR399j:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 74 ttagtggctgcatgccaatggaag-cttgccctgtaat 110
||||||||||| |||||||||| | |||||||||||||
Sbjct: 41 ttagtggctgcctgccaatggaggtcttgccctgtaat 4
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 2 ttgccgggcaaatctcctttggca 25
||||||| ||||||||||||||||
Sbjct: 105 ttgccggacaaatctcctttggca 82
>54494_sbi-miR399f:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
||||| |||||||||||||||||||
Sbjct: 105 attgctgggcaaatctcctttggca 81
>54493_sbi-miR399e:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
||||| |||||||||||||||||||
Sbjct: 111 attgctgggcaaatctcctttggca 87
>51747_ptc-miR399a:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
||||| |||||||||||||||||||
Sbjct: 115 attgcggggcaaatctcctttggca 91
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
||||| |||||||||||||||||||
Sbjct: 109 attgctgggcaaatctcctttggca 85
>48969_osa-miR399f:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
||||| |||||||||||||||||||
Sbjct: 111 attgctgggcaaatctcctttggca 87
>48968_osa-miR399e:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
||||| |||||||||||||||||||
Sbjct: 112 attgctgggcaaatctcctttggca 88
>48377_bna-miR399:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 5 ccgggcaaatctcctttggca 25
|||||||||||||||||||||
Sbjct: 101 ccgggcaaatctcctttggca 81
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
||||| |||||||||||||||||||
Sbjct: 90 attgcggggcaaatctcctttggca 66
>47020_ath-miR399f:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 5 ccgggcaaatctcctttggca 25
|||||||||||||||||||||
Sbjct: 108 ccgggcaaatctcctttggca 88
>47018_ath-miR399d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 attgccgggcaaatctcctttggca 25
||||| |||||||||||||||||||
Sbjct: 94 attgcggggcaaatctcctttggca 70
