miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54286_ptc-miRf12464-akr:pmrd
Length = 135
Score = 268 bits (135), Expect = 1e-72
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
Query: 61 gcagcgactcagttttccttgatgtttatgagtcgacaggggctgtgtgggctgacgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcagcgactcagttttccttgatgtttatgagtcgacaggggctgtgtgggctgacgaat 120
Query: 121 ccattcgtcacctat 135
|||||||||||||||
Sbjct: 121 ccattcgtcacctat 135
>54285_ptc-miRf12463-akr:pmrd
Length = 147
Score = 234 bits (118), Expect = 1e-62
Identities = 131/134 (97%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 65
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 66 gcagcgactcagttttccttgactgtttatgagtcgacaggggctgcgtgggctgacgaa 125
Query: 120 tccattcgtcacct 133
||||||||| ||||
Sbjct: 126 tccattcgtaacct 139
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 102 gctgtgtgggctgacgaatccattcgtcacctat 135
||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacctat 34
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagc 35
|||||||||||||||||||||| |||| |||||||
Sbjct: 113 gtgggctgacgaatccattcgtaacctgtgaaagc 147
>54284_ptc-miRf12462-akr:pmrd
Length = 147
Score = 222 bits (112), Expect = 5e-59
Identities = 131/136 (96%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 6 gtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctatttctgagtgg 65
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 66 gcagcgactcagttttccttgactgtttatgagtcgacaggggcagtgtgggctgacgaa 125
Query: 120 tccattcgtcacctat 135
||||||||||||||||
Sbjct: 126 tccattcgtcacctat 141
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagc 35
|||||||||||||||||||||||||||||||||||
Sbjct: 113 gtgggctgacgaatccattcgtcacctatgaaagc 147
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 102 gctgtgtgggctgacgaatccattcgtcacct 133
||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacct 32
>54280_ptc-miRf12458-akr:pmrd
Length = 147
Score = 218 bits (110), Expect = 8e-58
Identities = 129/134 (96%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 6 gtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctatttctgagtgg 65
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 66 gcagcgactcagttttccttgactgtttatgagtcgacaggggcagtgtgggctgacgaa 125
Query: 120 tccattcgtcacct 133
||||||||||||||
Sbjct: 126 tccattcgtcacct 139
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 102 gctgtgtgggctgacgaatccattcgtcacct 133
||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacct 32
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagc 35
||||||||||||||||||||||||||| |||||||
Sbjct: 113 gtgggctgacgaatccattcgtcacctctgaaagc 147
>54282_ptc-miRf12460-akr:pmrd
Length = 136
Score = 214 bits (108), Expect = 1e-56
Identities = 130/136 (95%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gtgggctgacgaatccattcgtcacctatgaaagcactttcggggcctatttctcagtgg 60
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
|||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||
Sbjct: 61 gcagcgactcagttttccttgactgtttatgagtacacaggggctgtgtgggttgacgaa 120
Query: 120 tccattcgtcacctat 135
| ||||||||||||||
Sbjct: 121 ttcattcgtcacctat 136
>54278_ptc-miRf12456-akr:pmrd
Length = 144
Score = 194 bits (98), Expect = 1e-50
Identities = 129/134 (96%), Gaps = 4/134 (2%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct: 6 gtgggctgacgaatccattcgtcacctatgaaagcagtttcgggg-ctatttctgagt-g 63
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 64 gcagcgactcagttttccttgactgtttatgagtc-acaggggctgtgtgggctgacgaa 122
Query: 120 tccattcgtcacct 133
||||||||||||||
Sbjct: 123 tccattcgtcacct 136
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 102 gctgtgtgggctgacgaatccattcgtcacctat 135
||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacctat 34
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagc 35
||||||||||||||||||||||||||| |||||||
Sbjct: 110 gtgggctgacgaatccattcgtcacctgtgaaagc 144
>54277_ptc-miRf12455-akr:pmrd
Length = 144
Score = 194 bits (98), Expect = 1e-50
Identities = 129/134 (96%), Gaps = 4/134 (2%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct: 6 gtgggctgacgaatccattcgtcacctatgaaagcagtttcgggg-ctatttctgagt-g 63
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 64 gcagcgactcagttttccttgactgtttatgagtc-acaggggctgtgtgggctgacgaa 122
Query: 120 tccattcgtcacct 133
||||||||||||||
Sbjct: 123 tccattcgtcacct 136
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 102 gctgtgtgggctgacgaatccattcgtcacctat 135
||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacctat 34
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagc 35
||||||||||||||||||||||||||| |||||||
Sbjct: 110 gtgggctgacgaatccattcgtcacctgtgaaagc 144
>53531_ptc-miRf11709-akr:pmrd
Length = 147
Score = 188 bits (95), Expect = 7e-49
Identities = 126/135 (93%), Gaps = 1/135 (0%)
Strand = Plus / Plus
Query: 2 tgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtggg 61
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct: 7 tgggctgacgaatccattcgtcacctctgaaagcagtttcgggggctttttctgagtggg 66
Query: 62 cagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaat 120
||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||
Sbjct: 67 cagcgactcagttttccttgactgtttatgagtcaattggggctgtgtgggctgatgaat 126
Query: 121 ccattcgtcacctat 135
|||||||||||||||
Sbjct: 127 ccattcgtcacctat 141
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagc 35
||||||||| |||||||||||||||||||||||||
Sbjct: 113 gtgggctgatgaatccattcgtcacctatgaaagc 147
>52605_ptc-miRf10783-akr:pmrd
Length = 140
Score = 186 bits (94), Expect = 3e-48
Identities = 125/134 (93%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||
Sbjct: 3 gtgggctgacgaatccattcgtcacctgtgaaagcattttcgggggctatttctgagtgg 62
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
|||||||||||||||||||||| ||||||||||| || | |||||||||||||||||||
Sbjct: 63 gcagcgactcagttttccttgactgtttatgagtgaactgtggctgtgtgggctgacgaa 122
Query: 120 tccattcgtcacct 133
||||||||||||||
Sbjct: 123 tccattcgtcacct 136
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 106 tgtgggctgacgaatccattcgtcacct 133
||||||||||||||||||||||||||||
Sbjct: 2 tgtgggctgacgaatccattcgtcacct 29
>54279_ptc-miRf12457-akr:pmrd
Length = 152
Score = 174 bits (88), Expect = 1e-44
Identities = 125/136 (91%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| |||||
Sbjct: 7 gtgggctgacgaatccattcgtcacctctgaaagctgtttcgggggctatttcttagtgg 66
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
|| ||||||||||||||||||| || ||| ||||| | |||||| |||||||||||||||
Sbjct: 67 gcggcgactcagttttccttgactggttaagagtccataggggcagtgtgggctgacgaa 126
Query: 120 tccattcgtcacctat 135
||||||||||||||||
Sbjct: 127 tccattcgtcacctat 142
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtt 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gtgggctgacgaatccattcgtcacctatgaaagcagtt 152
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 101 ggctgtgtgggctgacgaatccattcgtcacct 133
|||||||||||||||||||||||||||||||||
Sbjct: 1 ggctgtgtgggctgacgaatccattcgtcacct 33
>54281_ptc-miRf12459-akr:pmrd
Length = 147
Score = 167 bits (84), Expect = 3e-42
Identities = 124/136 (91%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |
Sbjct: 6 gtgggctgacgaatccattcgtcacctatgaaagcagtttcaggggctatttctgagttg 65
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
| |||||||||||||||| ||| | ||||||||| |||||||||||||||| |||||||
Sbjct: 66 gtagcgactcagttttccgtgactatttatgagtacacaggggctgtgtgggttgacgaa 125
Query: 120 tccattcgtcacctat 135
|||||| |||||||||
Sbjct: 126 tccattggtcacctat 141
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 102 gctgtgtgggctgacgaatccattcgtcacctat 135
|||| |||||||||||||||||||||||||||||
Sbjct: 1 gctgggtgggctgacgaatccattcgtcacctat 34
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagc 35
||||| ||||||||||||| |||||||||||||||
Sbjct: 113 gtgggttgacgaatccattggtcacctatgaaagc 147
>54283_ptc-miRf12461-akr:pmrd
Length = 137
Score = 147 bits (74), Expect = 2e-36
Identities = 121/134 (90%), Gaps = 2/134 (1%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 2 gtgggctaacgaatccattcgtcacctatgaaagcagtttcgggg-ctttttcttagtgg 60
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
||||||||| |||||||| | | ||||||||||| |||| |||||||||||||||||||
Sbjct: 61 gcagcgacttagttttccctaacagtttatgagtcaacagaggctgtgtgggctgacgaa 120
Query: 120 tccattcgtcacct 133
| ||||||| ||||
Sbjct: 121 tacattcgtaacct 134
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 107 gtgggctgacgaatccattcgtcacctat 135
||||||| |||||||||||||||||||||
Sbjct: 2 gtgggctaacgaatccattcgtcacctat 30
>53591_ptc-miRf11769-akr:pmrd
Length = 146
Score = 139 bits (70), Expect = 6e-34
Identities = 120/134 (89%), Gaps = 2/134 (1%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||| |||||||| |||| || |||||| | |||||
Sbjct: 6 gtgggctgacgaatccattcgtcacctgtgaaagcactttcaggcgctatttgtgagtgg 65
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
|||||| ||||||||||||||| |||||||||||| ||||||||||| ||| |||||||
Sbjct: 66 gcagcgtctcagttttccttgactgtttatgagtcaccaggggctgtgggggttgacgaa 125
Query: 120 tccattcgtcacct 133
| ||||||||||||
Sbjct: 126 t-cattcgtcacct 138
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 102 gctgtgtgggctgacgaatccattcgtcacct 133
||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgtgggctgacgaatccattcgtcacct 32
>53307_ptc-miRf11485-akr:pmrd
Length = 140
Score = 139 bits (70), Expect = 6e-34
Identities = 120/134 (89%), Gaps = 2/134 (1%)
Strand = Plus / Plus
Query: 1 gtgggctgacgaatccattcgtcacctatgaaagcagtttcggggcctatttctcagtgg 60
||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct: 5 gtgggctgacgaatccattcgtcacctgtgaaagcagtttcgggggctttttctatgttc 64
Query: 61 gcagcgactcagttttccttga-tgtttatgagtcgacaggggctgtgtgggctgacgaa 119
||| ||||||| |||||||||| ||||||||||| |||||||||||||||| ||| |||
Sbjct: 65 gcatcgactcaattttccttgactgtttatgagtacacaggggctgtgtggg-tgatgaa 123
Query: 120 tccattcgtcacct 133
||||||||||||||
Sbjct: 124 tccattcgtcacct 137
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 105 gtgtgggctgacgaatccattcgtcacct 133
|||||||||||||||||||||||||||||
Sbjct: 3 gtgtgggctgacgaatccattcgtcacct 31
>52128_ptc-miRf10306-akr:pmrd
Length = 142
Score = 99.6 bits (50), Expect = 5e-22
Identities = 94/106 (88%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 29 tgaaagcagtttcggggcctatttctcagtgggcagcgactcagttttccttga-tgttt 87
||||||||||||||||| || ||| | |||||| |||||||||||||||||||| |||||
Sbjct: 5 tgaaagcagtttcgggggctgtttgtgagtggg-agcgactcagttttccttgactgttt 63
Query: 88 atgagtcgacaggggctgtgtgggctgacgaatccattcgtcacct 133
|||||| | | |||||||| ||||||||||||||||||||||||
Sbjct: 64 atgagttaattgtggctgtgttggctgacgaatccattcgtcacct 109
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 4 ggctgacgaatccattcgtcacctatgaaagcagtttcggg 44
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 86 ggctgacgaatccattcgtcacctctgaaagcagtttcggg 126
