miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52216_ptc-miRf10394-akr:pmrd
Length = 102
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 7 gcgcgatccaacggtcggatcaaaagttatggccgtttcaaggaaaaaggtctccggaaa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gcgcgatccaacggtcggatcaaaagttatggccgtttcaaggaaaaaggtctccggaaa 43
Query: 67 ctacttacgaactatgagtgtgatccaactgttggatcaaac 108
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ctacttacgaactatgagtgtgatccaactgttggatcaaac 1
>53374_ptc-miRf11552-akr:pmrd
Length = 97
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 5 gagcgcgatccaacggtcggatcaaaagttatg 37
|||||||||||||||||||||||||||||||||
Sbjct: 97 gagcgcgatccaacggtcggatcaaaagttatg 65
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 gcgatccaacggtcggatcaaaagttatggc 39
|||||||||||||||||||||||||| ||||
Sbjct: 5 gcgatccaacggtcggatcaaaagttgtggc 35
>53375_ptc-miRf11553-akr:pmrd
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 9 gcgatccaacggtcggatcaaaagttatg 37
|||||||||||||||||||||||||||||
Sbjct: 89 gcgatccaacggtcggatcaaaagttatg 61
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 gcgatccaacggtcggatcaaaagttatggc 39
|||||||||||||||||||||||||| ||||
Sbjct: 1 gcgatccaacggtcggatcaaaagttgtggc 31
>53425_ptc-miRf11603-akr:pmrd
Length = 90
Score = 52.0 bits (26), Expect = 9e-08
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 2 tttgagcgcgatccaacggtcggatcaaaagttatggccgtttcaa 47
||||| || ||| ||||||||| |||||||||||||||| ||||||
Sbjct: 67 tttgaccgggatacaacggtcgaatcaaaagttatggccctttcaa 22
>53394_ptc-miRf11572-akr:pmrd
Length = 157
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 10 cgatccaacggtcggatcaaaagttatggcc 40
||||||||||||||||| ||||||| |||||
Sbjct: 35 cgatccaacggtcggatgaaaagttttggcc 5
>53213_ptc-miRf11391-akr:pmrd
Length = 147
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 agcgcgatccaacggtcggatcaaaagtt 34
|||||||| ||||||||||||||| ||||
Sbjct: 68 agcgcgatgcaacggtcggatcaatagtt 96
>53212_ptc-miRf11390-akr:pmrd
Length = 147
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 6 agcgcgatccaacggtcggatcaaaagtt 34
|||||||| ||||||||||||||| ||||
Sbjct: 68 agcgcgatgcaacggtcggatcaatagtt 96