miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>52216_ptc-miRf10394-akr:pmrd
          Length = 102

 Score =  202 bits (102), Expect = 4e-53
 Identities = 102/102 (100%)
 Strand = Plus / Minus

                                                                       
Query: 7   gcgcgatccaacggtcggatcaaaagttatggccgtttcaaggaaaaaggtctccggaaa 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gcgcgatccaacggtcggatcaaaagttatggccgtttcaaggaaaaaggtctccggaaa 43

                                                     
Query: 67  ctacttacgaactatgagtgtgatccaactgttggatcaaac 108
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  ctacttacgaactatgagtgtgatccaactgttggatcaaac 1




>53374_ptc-miRf11552-akr:pmrd
          Length = 97

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                           
Query: 5  gagcgcgatccaacggtcggatcaaaagttatg 37
          |||||||||||||||||||||||||||||||||
Sbjct: 97 gagcgcgatccaacggtcggatcaaaagttatg 65



 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 9  gcgatccaacggtcggatcaaaagttatggc 39
          |||||||||||||||||||||||||| ||||
Sbjct: 5  gcgatccaacggtcggatcaaaagttgtggc 35




>53375_ptc-miRf11553-akr:pmrd
          Length = 89

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                       
Query: 9  gcgatccaacggtcggatcaaaagttatg 37
          |||||||||||||||||||||||||||||
Sbjct: 89 gcgatccaacggtcggatcaaaagttatg 61



 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 9  gcgatccaacggtcggatcaaaagttatggc 39
          |||||||||||||||||||||||||| ||||
Sbjct: 1  gcgatccaacggtcggatcaaaagttgtggc 31




>53425_ptc-miRf11603-akr:pmrd
          Length = 90

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                        
Query: 2  tttgagcgcgatccaacggtcggatcaaaagttatggccgtttcaa 47
          ||||| || ||| ||||||||| |||||||||||||||| ||||||
Sbjct: 67 tttgaccgggatacaacggtcgaatcaaaagttatggccctttcaa 22




>53394_ptc-miRf11572-akr:pmrd
          Length = 157

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                         
Query: 10 cgatccaacggtcggatcaaaagttatggcc 40
          ||||||||||||||||| ||||||| |||||
Sbjct: 35 cgatccaacggtcggatgaaaagttttggcc 5




>53213_ptc-miRf11391-akr:pmrd
          Length = 147

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 6  agcgcgatccaacggtcggatcaaaagtt 34
          |||||||| ||||||||||||||| ||||
Sbjct: 68 agcgcgatgcaacggtcggatcaatagtt 96




>53212_ptc-miRf11390-akr:pmrd
          Length = 147

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 6  agcgcgatccaacggtcggatcaaaagtt 34
          |||||||| ||||||||||||||| ||||
Sbjct: 68 agcgcgatgcaacggtcggatcaatagtt 96