miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>52572_ptc-miRf10750-akr:pmrd
          Length = 91

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 1  attgtatgcagtccacagtgaaaaggctaaagcctttag 39
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 1  attgtatgcagtccacagtgaaaaggctaaagcctttag 39



 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 64 atgcctttcactgtggactgcacagtgcagt 94
          |||||||||||||||||||||||||||||||
Sbjct: 61 atgcctttcactgtggactgcacagtgcagt 91




>54106_ptc-miRf12284-akr:pmrd
          Length = 117

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 64  atgcctttcactgtggactgcacagtgcagt 94
           |||||||| ||||||||||||||||||||||
Sbjct: 72  atgccttttactgtggactgcacagtgcagt 102



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 66 gcctttcactgtggactgcacagtgcagt 94
          |||||| |||||||| |||||||||||||
Sbjct: 1  gccttttactgtggagtgcacagtgcagt 29




>54105_ptc-miRf12283-akr:pmrd
          Length = 100

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 64 atgcctttcactgtggactgcacagtgcagt 94
          |||||||| ||||||||||||||||||||||
Sbjct: 64 atgccttttactgtggactgcacagtgcagt 94




>52535_ptc-miRf10713-akr:pmrd
          Length = 117

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 64  atgcctttcactgtggactgcacagtgcagt 94
           |||||||| ||||||||||||||||||||||
Sbjct: 72  atgccttttactgtggactgcacagtgcagt 102



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 66 gcctttcactgtggactgcacagtgcagt 94
          |||||| |||||||| |||||||||||||
Sbjct: 1  gccttttactgtggagtgcacagtgcagt 29




>53774_ptc-miRf11952-akr:pmrd
          Length = 80

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 73 actgtggactgcacagtgcagt 94
          ||||||||||||||||||||||
Sbjct: 39 actgtggactgcacagtgcagt 60




>52897_ptc-miRf11075-akr:pmrd
          Length = 86

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 73 actgtggactgcacagtgcagt 94
          ||||||||||||||||||||||
Sbjct: 45 actgtggactgcacagtgcagt 24




>54016_ptc-miRf12194-akr:pmrd
          Length = 66

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 71 tcactgtggactgcacagtgcagt 94
          ||||||||||||||| ||||||||
Sbjct: 42 tcactgtggactgcatagtgcagt 19