miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>48535_gma-miR156h:pmrd
          Length = 147

 Score = 56.0 bits (28), Expect = 2e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 355 gattgagatgacagaagagagagagcac 382
           ||||||||||||||||||||||||||||
Sbjct: 120 gattgagatgacagaagagagagagcac 147




>51340_ppd-miR156:pmrd
          Length = 146

 Score = 48.1 bits (24), Expect = 5e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 359 gagatgacagaagagagagagcac 382
           ||||||||||||||||||||||||
Sbjct: 123 gagatgacagaagagagagagcac 146




>48470_cru-miR156:pmrd
          Length = 67

 Score = 48.1 bits (24), Expect = 5e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 355 gattgagatgacagaagagagagagcac 382
           ||||| ||||||||||||||||||||||
Sbjct: 40  gattgggatgacagaagagagagagcac 67




>48534_gma-miR156g:pmrd
          Length = 209

 Score = 46.1 bits (23), Expect = 2e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 360 agatgacagaagagagagagcac 382
           |||||||||||||||||||||||
Sbjct: 187 agatgacagaagagagagagcac 209




>54920_zma-miR156j:pmrd
          Length = 125

 Score = 44.1 bits (22), Expect = 8e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 361 gatgacagaagagagagagcac 382
           ||||||||||||||||||||||
Sbjct: 19  gatgacagaagagagagagcac 40




>54626_sof-miR156h:pmrd
          Length = 343

 Score = 44.1 bits (22), Expect = 8e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 361 gatgacagaagagagagagcac 382
           ||||||||||||||||||||||
Sbjct: 322 gatgacagaagagagagagcac 343




>54396_sbi-miR156d:pmrd
          Length = 125

 Score = 44.1 bits (22), Expect = 8e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 361 gatgacagaagagagagagcac 382
           ||||||||||||||||||||||
Sbjct: 19  gatgacagaagagagagagcac 40




>48811_osa-miR156k:pmrd
          Length = 106

 Score = 44.1 bits (22), Expect = 8e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 361 gatgacagaagagagagagcac 382
           ||||||||||||||||||||||
Sbjct: 9   gatgacagaagagagagagcac 30




>48472_csi-miR156b:pmrd
          Length = 515

 Score = 44.1 bits (22), Expect = 8e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 361 gatgacagaagagagagagcac 382
           ||||||||||||||||||||||
Sbjct: 494 gatgacagaagagagagagcac 515




>48426_cpt-miR156b:pmrd
          Length = 185

 Score = 44.1 bits (22), Expect = 8e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 361 gatgacagaagagagagagcac 382
           ||||||||||||||||||||||
Sbjct: 9   gatgacagaagagagagagcac 30




>46919_ath-miR156o:pmrd
          Length = 245

 Score = 44.1 bits (22), Expect = 8e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 361 gatgacagaagagagagagcac 382
           ||||||||||||||||||||||
Sbjct: 224 gatgacagaagagagagagcac 245




>54928_zma-miR157m:pmrd
          Length = 189

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 358 tgagatgacagaagagagagagcac 382
           |||| ||||||||||||||||||||
Sbjct: 165 tgagttgacagaagagagagagcac 189




>54926_zma-miR156q:pmrd
          Length = 189

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 358 tgagatgacagaagagagagagcac 382
           |||| ||||||||||||||||||||
Sbjct: 165 tgagttgacagaagagagagagcac 189




>54925_zma-miR156p:pmrd
          Length = 189

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 358 tgagatgacagaagagagagagcac 382
           |||| ||||||||||||||||||||
Sbjct: 165 tgagttgacagaagagagagagcac 189




>54627_sof-miR156u:pmrd
          Length = 82

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 358 tgagatgacagaagagagagagcac 382
           |||| ||||||||||||||||||||
Sbjct: 58  tgagttgacagaagagagagagcac 82




>48653_hvv-miR156b:pmrd
          Length = 86

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 358 tgagatgacagaagagagagagcac 382
           |||| ||||||||||||||||||||
Sbjct: 62  tgagttgacagaagagagagagcac 86




>48492_ghr-miR157:pmrd
          Length = 152

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 362 atgacagaagagagagagcac 382
           |||||||||||||||||||||
Sbjct: 1   atgacagaagagagagagcac 21




>48305_bdi-miR156:pmrd
          Length = 147

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 358 tgagatgacagaagagagagagcac 382
           |||| ||||||||||||||||||||
Sbjct: 96  tgagttgacagaagagagagagcac 120