miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54666_stu-miR170:pmrd
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatcatttgcgcgtttgagaattgtccagccagcaatagttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatcatttgcgcgtttgagaattgtccagccagcaatagttca 60
Query: 61 gaggcctgaaaaatctggtcataaataaactgttgttcctgcaattgatgacgaggcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggcctgaaaaatctggtcataaataaactgttgttcctgcaattgatgacgaggcacc 120
Query: 121 atca 124
||||
Sbjct: 121 atca 124
>54910_zel-miR171:pmrd
Length = 65
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatcatttgcgcgtttgagaa 38
|||||||||||||||||||| |||||||| ||||||
Sbjct: 2 gattgagccgcgccaatatcccttgcgcgtgtgagaa 38
>54832_vvi-miR171e:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatca 22
||||||||||||||||||||||
Sbjct: 70 tgattgagccgcgccaatatca 91
>54553_sly-miR171c:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatca 22
||||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatca 99
>54461_sbi-miR171j:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatca 22
||||||||||||||||||||||
Sbjct: 83 tgattgagccgcgccaatatca 104
>48636_gra-miR171:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatcatttgcgcg 30
||||||||||||||||||||| |||||||
Sbjct: 1 tgattgagccgcgccaatatcccttgcgcg 30
>46981_ath-miR171n:pmrd
Length = 461
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatcatttgcgcg 30
||||||||||||||||||||| |||||||
Sbjct: 1 tgattgagccgcgccaatatcccttgcgcg 30
>55028_zma-miR171a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 79 tgattgagccgcgccaatatc 99
>55027_zma-miR170p:pmrd
Length = 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 42 tgattgagccgcgccaatatc 62
>54833_vvi-miR171f:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatca 22
|||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatca 91
>54554_sly-miR171d:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatca 22
|||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatca 93
>54458_sbi-miR171g:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 57 tgattgagccgcgccaatatc 77
>54451_sbi-miR170:pmrd
Length = 55
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 35 tgattgagccgcgccaatatc 55
>52488_ptc-miRf10666-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatca 22
|||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatca 88
>52331_ptc-miRf10509-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatca 22
|||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatca 93
>51687_ptc-miR171d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatca 22
|||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatca 92
>51686_ptc-miR171c:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatca 22
|||||||||||||||||||||
Sbjct: 76 gattgagccgcgccaatatca 96
>51383_ppt-miR171b:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatca 22
|||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatca 85
>51382_ppt-miR171a:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatca 22
|||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatca 84
>51342_ppd-miR170:pmrd
Length = 297
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 277 tgattgagccgcgccaatatc 297
>48895_osa-miR171a:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 67 tgattgagccgcgccaatatc 87
>48569_gma-miR171m:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 152 tgattgagccgcgccaatatc 172
>48484_gcl-miR171:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 185 tgattgagccgcgccaatatc 205
>48407_bra-miR171e:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatc 104
>48369_bna-miR171g:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98
>48368_bna-miR171f:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatc 104
>48313_bdi-miR171d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 81 tgattgagccgcgccaatatc 101
>48311_bdi-miR171a:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 50 tgattgagccgcgccaatatc 70
>46982_ath-miR171o:pmrd
Length = 339
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 319 tgattgagccgcgccaatatc 339
>46980_ath-miR171m:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 72 tgattgagccgcgccaatatc 92
>46977_ath-miR171a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 88 tgattgagccgcgccaatatc 108
>46976_ath-miR170n:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 152 tgattgagccgcgccaatatc 172
>46975_ath-miR170m:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 72 tgattgagccgcgccaatatc 92
>46853_ace-miR171c:pmrd
Length = 216
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 196 tgattgagccgcgccaatatc 216
>46852_ace-miR171b:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 195 tgattgagccgcgccaatatc 215
>46851_ace-miR171a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46850_ace-miR170d:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 195 tgattgagccgcgccaatatc 215
>46849_ace-miR170c:pmrd
Length = 55
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46848_ace-miR170b:pmrd
Length = 76
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 56 tgattgagccgcgccaatatc 76
>46847_ace-miR170a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatc 21
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54582_smo-miR171d:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 attgagccgcgccaatatca 22
||||||||||||||||||||
Sbjct: 71 attgagccgcgccaatatca 90
>51694_ptc-miR171k:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>51346_ppe-miR171:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatcatt 24
||||||||||| ||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcatt 90
>51345_ppe-miR170:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgattgagccgcgccaatatcatt 24
||||||||||| ||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcatt 90
>48497_ghr-miR171:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 gattgagccgcgccaatatc 21
||||||||||||||||||||
Sbjct: 66 gattgagccgcgccaatatc 85
