miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>52093_ptc-miRf10271-akr:pmrd
          Length = 174

 Score = 69.9 bits (35), Expect = 7e-13
 Identities = 67/75 (89%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                      
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
          ||||||||||||||||||||| ||||| | |||| ||||| || |||||||||| |||||
Sbjct: 5  gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 64

                         
Query: 70 gattccacagtccta 84
          || ||||||||||||
Sbjct: 65 ga-tccacagtccta 78



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 104 ggataggcttgcggcttgcatatgttaggagcttt 138
           ||||||| ||||||||||||||| | |||||||||
Sbjct: 92  ggataggtttgcggcttgcatatctcaggagcttt 126




>51604_ptc-miR159c:pmrd
          Length = 183

 Score = 69.9 bits (35), Expect = 7e-13
 Identities = 67/75 (89%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                      
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
          ||||||||||||||||||||| ||||| | |||| ||||| || |||||||||| |||||
Sbjct: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69

                         
Query: 70 gattccacagtccta 84
          || ||||||||||||
Sbjct: 70 ga-tccacagtccta 83



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 104 ggataggcttgcggcttgcatatgttaggagcttt 138
           ||||||| ||||||||||||||| | |||||||||
Sbjct: 97  ggataggtttgcggcttgcatatctcaggagcttt 131




>51602_ptc-miR159a:pmrd
          Length = 183

 Score = 69.9 bits (35), Expect = 7e-13
 Identities = 67/75 (89%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                      
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
          ||||||||||||||||||||| ||||| | |||| ||||| || |||||||||| |||||
Sbjct: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69

                         
Query: 70 gattccacagtccta 84
          || ||||||||||||
Sbjct: 70 ga-tccacagtccta 83




>54540_sly-miR159:pmrd
          Length = 177

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 59/66 (89%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                       
Query: 119 ttgcatatgttaggagcttt--tttacctctttgttttatctttctttggattgaaggga 176
           |||||||||| |||||||||  |||||| |||||||| ||| || |||||||||||||||
Sbjct: 113 ttgcatatgtcaggagctttattttacc-ctttgtttgatcattttttggattgaaggga 171

                 
Query: 177 gctcta 182
           ||||||
Sbjct: 172 gctcta 177



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 tggagctccttgaagtccaa 31
          ||||||||||||||||||||
Sbjct: 1  tggagctccttgaagtccaa 20




>51603_ptc-miR159b:pmrd
          Length = 187

 Score = 60.0 bits (30), Expect = 6e-10
 Identities = 61/70 (87%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 113 tgcggcttgcatatgttaggagcttttttacctctttgttttatctttctttggattgaa 172
           |||||||||||||| | ||||||||| ||||||  | |||  |||||| |||||||||||
Sbjct: 110 tgcggcttgcatatctcaggagctttattacctaat-gttagatctttttttggattgaa 168

                     
Query: 173 gggagctcta 182
           ||||||||||
Sbjct: 169 gggagctcta 178



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 gtggagctccttgaagtccaa 31
          |||||||||||||||||||||
Sbjct: 10 gtggagctccttgaagtccaa 30




>48699_mtr-miR159a:pmrd
          Length = 168

 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 150 gttttatctttctttggattgaagggagctcta 182
           |||| ||||||||||||||||||||||||||||
Sbjct: 136 gtttaatctttctttggattgaagggagctcta 168




>48539_gma-miR159a:pmrd
          Length = 214

 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 159 ttctttggattgaagggagctctacac 185
           |||||||||||||||||||||||||||
Sbjct: 172 ttctttggattgaagggagctctacac 198



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 60/71 (84%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
          |||||||||||||||||||||  |||||| || | |||| |||  ||||||| | |||||
Sbjct: 20 gtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatg 79

                     
Query: 70 gattccacagt 80
          ||| |||||||
Sbjct: 80 gatcccacagt 90




>48395_bra-miR159a:pmrd
          Length = 185

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 159 ttctttggattgaagggagctctaca 184
           ||||||||||||||||||||||||||
Sbjct: 160 ttctttggattgaagggagctctaca 185




>48339_bna-miR159:pmrd
          Length = 183

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 159 ttctttggattgaagggagctctaca 184
           ||||||||||||||||||||||||||
Sbjct: 158 ttctttggattgaagggagctctaca 183




>54378_pvu-miR159:pmrd
          Length = 174

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 159 ttctttggattgaagggagctctac 183
           |||||||||||||||||||||||||
Sbjct: 150 ttctttggattgaagggagctctac 174



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 gtggagctccttgaagtccaa 31
          |||||||||||||||||||||
Sbjct: 1  gtggagctccttgaagtccaa 21




>54377_pvu-miR159:pmrd
          Length = 174

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 159 ttctttggattgaagggagctctac 183
           |||||||||||||||||||||||||
Sbjct: 150 ttctttggattgaagggagctctac 174



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 gtggagctccttgaagtccaa 31
          |||||||||||||||||||||
Sbjct: 1  gtggagctccttgaagtccaa 21




>46931_ath-miR159a:pmrd
          Length = 184

 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 159 ttctttggattgaagggagctctac 183
           |||||||||||||||||||||||||
Sbjct: 160 ttctttggattgaagggagctctac 184




>54777_vvi-miR159c:pmrd
          Length = 190

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 162 tttggattgaagggagctctacac 185
           ||||||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctctacac 183



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 11 gtggagctccttgaagtccaaaagagg 37
          ||||||||||||||||||||| |||||
Sbjct: 8  gtggagctccttgaagtccaatagagg 34



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 104 ggataggcttgcggcttgcatatgttaggagct 136
           ||||||||||| ||||||||||| | |||||||
Sbjct: 103 ggataggcttgtggcttgcatatctcaggagct 135




>48686_ltu-miR159:pmrd
          Length = 345

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 162 tttggattgaagggagctctacac 185
           ||||||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctctacac 24




>48824_osa-miR159f:pmrd
          Length = 188

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 163 ttggattgaagggagctctacac 185
           |||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacac 181




>48701_mtr-miR159c:pmrd
          Length = 44

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 162 tttggattgaagggagctctaca 184
           |||||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctctaca 23




>46932_ath-miR159b:pmrd
          Length = 196

 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 159 ttctttggattgaagggagctct 181
           |||||||||||||||||||||||
Sbjct: 165 ttctttggattgaagggagctct 187




>54930_zma-miR159a:pmrd
          Length = 246

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctct 226




>54674_tae-miR159b:pmrd
          Length = 255

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctct 249




>54631_sof-miR159d:pmrd
          Length = 265

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245




>54629_sof-miR159b:pmrd
          Length = 266

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctct 246




>54628_sof-miR159a:pmrd
          Length = 265

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245




>54392_sar-miR159:pmrd
          Length = 175

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174




>51338_pgl-miR159:pmrd
          Length = 226

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 204 tctttggattgaagggagctct 225




>48825_osa-miR159m:pmrd
          Length = 249

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 227 tctttggattgaagggagctct 248




>48820_osa-miR159b:pmrd
          Length = 188

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctct 177




>48819_osa-miR159a:pmrd
          Length = 272

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261




>48796_oru-miR159:pmrd
          Length = 274

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 160 tctttggattgaagggagctct 181
           ||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261




>48728_mtr-miR319b:pmrd
          Length = 42

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 163 ttggattgaagggagctctaca 184
           ||||||||||||||||||||||
Sbjct: 1   ttggattgaagggagctctaca 22