miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49004_osa-miR442:pmrd
Length = 233
Score = 188 bits (95), Expect = 1e-48
Identities = 159/179 (88%), Gaps = 1/179 (0%)
Strand = Plus / Plus
Query: 8 aaaaaataactaattacacagattgcgattaatttgcgagacgaatcttttaagcctaat 67
|||||||||||||||| |||||| || ||| |||||||||||||||||||||||||||
Sbjct: 30 aaaaaataactaattatacagatgacgtgtaaattgcgagacgaatcttttaagcctaat 89
Query: 68 tgctccatgatttatcaatgtggtgctgcagtaaacatttgctaataacggattaattag 127
||||||||||| | |||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 90 tgctccatgatctgacaatgtggtgctacagtaaacatttgctaatgacggattaattag 149
Query: 128 gcttaataaatttatctcatggtttactgacgaattctgtaattagtttt-ttattagt 185
|||||||||||| |||| |||||| |||| ||||||||||| ||||| ||||||||
Sbjct: 150 gcttaataaattcgtctcgcagtttacagacggattctgtaatttgttttgttattagt 208
>50895_osa-miRf11680-akr:pmrd
Length = 145
Score = 129 bits (65), Expect = 8e-31
Identities = 101/113 (89%)
Strand = Plus / Plus
Query: 27 agattgcgattaatttgcgagacgaatcttttaagcctaattgctccatgatttatcaat 86
|||||||| ||| |||||||||| ||||||||||||||||||| |||| |||| ||||
Sbjct: 4 agattgcgtgtaaattgcgagacggatcttttaagcctaattgcaccataatttgacaat 63
Query: 87 gtggtgctgcagtaaacatttgctaataacggattaattaggcttaataaatt 139
|||||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 64 gtggtgctaaagtaaacatttgctaatgatggattaattaggcttaataaatt 116
>50149_osa-miRf10934-akr:pmrd
Length = 143
Score = 115 bits (58), Expect = 1e-26
Identities = 91/102 (89%)
Strand = Plus / Plus
Query: 43 gcgagacgaatcttttaagcctaattgctccatgatttatcaatgtggtgctgcagtaaa 102
||||||||||||||||| |||||||||| |||| ||||| |||||| ||| | || ||||
Sbjct: 19 gcgagacgaatcttttaggcctaattgcgccataatttaacaatgttgtggtacaataaa 78
Query: 103 catttgctaataacggattaattaggcttaataaatttatct 144
||||||||||| ||||||||||||||||| ||||||| ||||
Sbjct: 79 catttgctaatgacggattaattaggcttcataaattcatct 120
>49008_osa-miR445a:pmrd
Length = 268
Score = 85.7 bits (43), Expect = 1e-17
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 37 taatttgcgagacgaatcttttaagcctaattgctccatgatttatcaatgtggtgctgc 96
||||| |||||||||||||||| || |||||| | ||||||||| ||||||| |||| |
Sbjct: 192 taattcgcgagacgaatcttttgagtctaattacaccatgatttgacaatgtgatgctac 133
Query: 97 agtaaacatttgctaataacggattaattaggcttaataaatt 139
||||||| ||| |||| | ||||||||||||||||| |||||
Sbjct: 132 agtaaacttttcataattatggattaattaggcttaaaaaatt 90
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 37 taatttgcgagacgaatcttttaagcctaatt 68
|||| |||||||||||| ||||||||||||||
Sbjct: 76 taatctgcgagacgaattttttaagcctaatt 107
>49010_osa-miR445c:pmrd
Length = 260
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 44 cgagacgaatcttttaagcctaattgctccatgatt 79
||||||||||||||||||||||||| | ||||||||
Sbjct: 173 cgagacgaatcttttaagcctaattacaccatgatt 138
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 37 taatttgcgagacgaatcttttaagcctaatt 68
|||| |||||||||||| ||||||||||||||
Sbjct: 81 taatctgcgagacgaattttttaagcctaatt 112
>50021_osa-miRf10806-akr:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 43 gcgagacgaatcttttaagcctaatt 68
||||||||||||||||||||||||||
Sbjct: 116 gcgagacgaatcttttaagcctaatt 91
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 gcgagacgaatcttttaagcctaatt 68
|||||||||||||||| |||||||||
Sbjct: 8 gcgagacgaatcttttgagcctaatt 33
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 102 acatttgctaataacggattaattaggct 130
|||| ||||||| ||||||||||||||||
Sbjct: 53 acatgtgctaatgacggattaattaggct 25
>49455_osa-miRf10240-akr:pmrd
Length = 128
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 102 acatttgctaataacggattaattaggct 130
|||| ||||||||||||||||||||||||
Sbjct: 72 acatgtgctaataacggattaattaggct 100
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 gcgagacgaatcttttaagcctaatt 68
|||||||||||||||| |||||||||
Sbjct: 117 gcgagacgaatcttttgagcctaatt 92
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 gagacgaatcttttaagcctaatt 68
|||||||||||||| |||||||||
Sbjct: 14 gagacgaatcttttgagcctaatt 37
>49011_osa-miR445d:pmrd
Length = 312
Score = 50.1 bits (25), Expect = 6e-07
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 34 gattaatttgcgagacgaatcttttaagcctaattgctccatgatttatcaatgtggtgc 93
|||||||| |||||| |||||| || || |||||| || |||||| | ||||| |||
Sbjct: 94 gattaattcgcgagatgaatctattgagtctaattaatcaatgattagcctatgtgatgc 153
Query: 94 tgcagtaaacatttgctaataacggattaattaggcttaataaatttatctca 146
| || ||||||| || |||| | ||||||||||||||||| || ||| |||||
Sbjct: 154 tacactaaacatgtgttaattatggattaattaggcttaaaaattttgtctca 206
>49015_osa-miR445h:pmrd
Length = 277
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 37 taatttgcgagacgaatcttttaagcctaatt 68
|||| |||||||||||| ||||||||||||||
Sbjct: 89 taatctgcgagacgaattttttaagcctaatt 120
Score = 46.1 bits (23), Expect = 1e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 37 taatttgcgagacgaatcttttaagcctaattgctccatgatt 79
||||| |||||||||||||||| || |||||| | ||||||||
Sbjct: 188 taattcgcgagacgaatcttttgagtctaattacaccatgatt 146
>49014_osa-miR445g:pmrd
Length = 275
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 37 taatttgcgagacgaatcttttaagcctaatt 68
|||| |||||||||||| ||||||||||||||
Sbjct: 88 taatctgcgagacgaattttttaagcctaatt 119
>49012_osa-miR445e:pmrd
Length = 265
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 37 taatttgcgagacgaatcttttaagcctaatt 68
|||| |||||||||||| ||||||||||||||
Sbjct: 83 taatctgcgagacgaattttttaagcctaatt 114
Score = 46.1 bits (23), Expect = 1e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 37 taatttgcgagacgaatcttttaagcctaattgctccatgatt 79
||||| |||||||||||||||| || |||||| | ||||||||
Sbjct: 182 taattcgcgagacgaatcttttgagtctaattacaccatgatt 140
>49013_osa-miR445f:pmrd
Length = 305
Score = 46.1 bits (23), Expect = 1e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 37 taatttgcgagacgaatcttttaagcctaattgctccatgatt 79
||||| |||||||||||||||| || |||||| | ||||||||
Sbjct: 203 taattcgcgagacgaatcttttgagtctaattacaccatgatt 161
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 37 taatttgcgagacgaatcttttaagcctaatt 68
|||| |||| ||||||| ||||||||||||||
Sbjct: 104 taatctgcgggacgaattttttaagcctaatt 135
>49009_osa-miR445b:pmrd
Length = 264
Score = 46.1 bits (23), Expect = 1e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 37 taatttgcgagacgaatcttttaagcctaattgctccatgatt 79
||||| |||||||||||||||| || |||||| | ||||||||
Sbjct: 181 taattcgcgagacgaatcttttgagtctaattacaccatgatt 139
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 37 taatttgcgagacgaatcttttaagcctaatt 68
|||| ||||||||||| ||||||||||||||
Sbjct: 82 taatctgcgagacgaactttttaagcctaatt 113
>51249_osa-miRf12034-akr:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 46 agacgaatcttttaagcctaattgctccatgatt 79
||||||||||||| ||||||||| |||||||||
Sbjct: 12 agacgaatcttttgagcctaattagtccatgatt 45
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 107 tgctaataacggattaattaggct 130
||||||| ||||||||||||||||
Sbjct: 74 tgctaatgacggattaattaggct 97
>51000_osa-miRf11785-akr:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 gcgagacgaatcttttaagcctaatt 68
|||||||||||||||| |||||||||
Sbjct: 12 gcgagacgaatcttttgagcctaatt 37
>50516_osa-miRf11301-akr:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 43 gcgagacgaatcttttaagcctaatt 68
|||||||||||||||| |||||||||
Sbjct: 69 gcgagacgaatcttttgagcctaatt 44
>49733_osa-miRf10518-akr:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 gcgagacgaatcttttaagcctaatt 68
|||||||||||||||| |||||||||
Sbjct: 9 gcgagacgaatcttttgagcctaatt 34
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 44 cgagacgaatcttttaagcctaatt 68
||||||||||||||| |||||||||
Sbjct: 113 cgagacgaatcttttgagcctaatt 89
>49016_osa-miR445i:pmrd
Length = 244
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 37 taatttgcgagacgaatcttttaa 60
||||| ||||||||||||||||||
Sbjct: 154 taattcgcgagacgaatcttttaa 131
