miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54669_stu-miR403:pmrd
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 16 ggaagaggcatatttcacgtttgtgcgtgaatctaacaacccttttcatcagaaaaactg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagaggcatatttcacgtttgtgcgtgaatctaacaacccttttcatcagaaaaactg 60
Query: 76 ttgttgtttgctagattcacgcacaaactcgtaatatgtatttttc 121
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttgtttgctagattcacgcacaaactcgtaatatgtatttttc 106
>54562_sly-miR403:pmrd
Length = 130
Score = 184 bits (93), Expect = 1e-47
Identities = 108/113 (95%)
Strand = Plus / Plus
Query: 1 agaaatggaaaatcaggaagaggcatatttcacgtttgtgcgtgaatctaacaacccttt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2 agaaattgaaaatcaggaagaggcatatttcacgtttgtgcgtgaatctaacaactcttt 61
Query: 61 tcatcagaaaaactgttgttgtttgctagattcacgcacaaactcgtaatatg 113
||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 62 tcatctgaaaaactgttattgtttgctagattcacgcacaagctcgtaatatg 114
>48424_cpa-miR403:pmrd
Length = 126
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 84 tgctagattcacgcacaaactcgtaat 110
|||||||||||||||||||||||||||
Sbjct: 88 tgctagattcacgcacaaactcgtaat 114
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 gaggcatatttcacgtttgtgcgtgaatctaa 51
||||||||||||| ||||||||| ||||||||
Sbjct: 5 gaggcatatttcaagtttgtgcgcgaatctaa 36
>48413_bst-miR403:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcgtaatatgtatttt 119
|||||||||||||||||||||||| ||| ||||
Sbjct: 91 tagattcacgcacaaactcgtaatctgtctttt 123
>54891_vvi-miR403f:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcgtaat 110
||||||||||||||||||||||||
Sbjct: 79 tagattcacgcacaaactcgtaat 102
>51759_ptc-miR403a:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcgtaat 110
||||||||||||||||||||||||
Sbjct: 104 tagattcacgcacaaactcgtaat 127
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 21 aggcatatttcacgtttgtgcgtgaatctaa 51
|||||||||||| |||||||| |||||||||
Sbjct: 1 aggcatatttcaggtttgtgcatgaatctaa 31
>51353_ppl-miR403:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcgtaat 110
||||||||||||||||||||||||
Sbjct: 104 tagattcacgcacaaactcgtaat 127
>47024_ath-miR403:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcgtaat 110
||||||||||||||||||||||||
Sbjct: 104 tagattcacgcacaaactcgtaat 127
>54889_vvi-miR403d:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 34 gtttgtgcgtgaatctaacaacccttt 60
|||||||||||||||||||| ||||||
Sbjct: 73 gtttgtgcgtgaatctaacaccccttt 47
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcg 106
||||||||||||||||||||
Sbjct: 57 tagattcacgcacaaactcg 76
>54887_vvi-miR403b:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 34 gtttgtgcgtgaatctaacaacccttt 60
|||||||||||||||||||| ||||||
Sbjct: 73 gtttgtgcgtgaatctaacaccccttt 47
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcg 106
||||||||||||||||||||
Sbjct: 57 tagattcacgcacaaactcg 76
>54888_vvi-miR403c:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcgt 107
|||||||||||||||||||||
Sbjct: 86 tagattcacgcacaaactcgt 106
>54886_vvi-miR403a:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcgt 107
|||||||||||||||||||||
Sbjct: 86 tagattcacgcacaaactcgt 106
>54890_vvi-miR403e:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcg 106
||||||||||||||||||||
Sbjct: 86 tagattcacgcacaaactcg 105
>51761_ptc-miR403c:pmrd
Length = 79
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcg 106
||||||||||||||||||||
Sbjct: 60 tagattcacgcacaaactcg 79
>51760_ptc-miR403b:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 tagattcacgcacaaactcg 106
||||||||||||||||||||
Sbjct: 72 tagattcacgcacaaactcg 91
