miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54839_vvi-miR172c:pmrd
          Length = 138

 Score =  216 bits (109), Expect = 3e-57
 Identities = 121/125 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgatggtgacttat 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 11  ggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgatggtgactttt 70

                                                                       
Query: 64  gtggtcccttcctacactccgatggctctttgatatgggaatcttgatgatgctgccgtg 123
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct: 71  gtggtcccttcctacactccgatggctctttgatgtgggaatcttgatgatgctgcagcg 130

                
Query: 124 gcaat 128
           |||||
Sbjct: 131 gcaat 135




>53842_ptc-miRf12020-akr:pmrd
          Length = 136

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 4  ggagcatcatcaagattcacaag 26
          |||||||||||||||||||||||
Sbjct: 9  ggagcatcatcaagattcacaag 31



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgggaatcttgatgatgctgc 119
           |||||||||||||||||||||
Sbjct: 108 tgggaatcttgatgatgctgc 128




>52375_ptc-miRf10553-akr:pmrd
          Length = 136

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 4  ggagcatcatcaagattcacaag 26
          |||||||||||||||||||||||
Sbjct: 9  ggagcatcatcaagattcacaag 31



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgggaatcttgatgatgctgc 119
           |||||||||||||||||||||
Sbjct: 108 tgggaatcttgatgatgctgc 128




>51704_ptc-miR172g:pmrd
          Length = 143

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 4  ggagcatcatcaagattcacaag 26
          |||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaag 35



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 99  tgggaatcttgatgatgctgccgtggcaat 128
           ||||||||||||||||||||| | ||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggcaat 141




>51701_ptc-miR172d:pmrd
          Length = 182

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 97  tatgggaatcttgatgatgctgc 119
           |||||||||||||||||||||||
Sbjct: 149 tatgggaatcttgatgatgctgc 171



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 7  gcatcatcaagattcacaag 26
          ||||||||||||||||||||
Sbjct: 16 gcatcatcaagattcacaag 35




>53739_ptc-miRf11917-akr:pmrd
          Length = 143

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 98  atgggaatcttgatgatgctgc 119
           ||||||||||||||||||||||
Sbjct: 105 atgggaatcttgatgatgctgc 126




>52835_ptc-miRf11013-akr:pmrd
          Length = 136

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 98  atgggaatcttgatgatgctgc 119
           ||||||||||||||||||||||
Sbjct: 35  atgggaatcttgatgatgctgc 14




>52315_ptc-miRf10493-akr:pmrd
          Length = 141

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 98  atgggaatcttgatgatgctgc 119
           ||||||||||||||||||||||
Sbjct: 104 atgggaatcttgatgatgctgc 125




>51948_ptc-miRf10126-akr:pmrd
          Length = 152

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 99  tgggaatcttgatgatgctgccgtggcaat 128
           ||||||||||||||||||||| | ||||||
Sbjct: 116 tgggaatcttgatgatgctgcagcggcaat 145




>51901_ptc-miRf10079-akr:pmrd
          Length = 132

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 98  atgggaatcttgatgatgctgc 119
           ||||||||||||||||||||||
Sbjct: 33  atgggaatcttgatgatgctgc 12




>51705_ptc-miR172h:pmrd
          Length = 143

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 99  tgggaatcttgatgatgctgccgtggcaat 128
           ||||||||||||||||||||| | ||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggcaat 141




>51702_ptc-miR172e:pmrd
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 98  atgggaatcttgatgatgctgc 119
           ||||||||||||||||||||||
Sbjct: 101 atgggaatcttgatgatgctgc 122




>48151_ath-miRf11051-akr:pmrd
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 4  ggagcatcatcaagattcacaa 25
          ||||||||||||||||||||||
Sbjct: 18 ggagcatcatcaagattcacaa 39




>47855_ath-miRf10755-akr:pmrd
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 4   ggagcatcatcaagattcacaa 25
           ||||||||||||||||||||||
Sbjct: 116 ggagcatcatcaagattcacaa 95




>47545_ath-miRf10445-akr:pmrd
          Length = 131

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 4  ggagcatcatcaagattcacaa 25
          ||||||||||||||||||||||
Sbjct: 17 ggagcatcatcaagattcacaa 38




>46986_ath-miR172c:pmrd
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 4  ggagcatcatcaagattcacaa 25
          ||||||||||||||||||||||
Sbjct: 18 ggagcatcatcaagattcacaa 39




>46883_aqc-miR172b:pmrd
          Length = 108

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 98  atgggaatcttgatgatgctgc 119
           ||||||||||||||||||||||
Sbjct: 83  atgggaatcttgatgatgctgc 104




>46882_aqc-miR172a:pmrd
          Length = 135

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 94  tgatatgggaatcttgatgatgctgc 119
           ||||||| ||||||||||||||||||
Sbjct: 91  tgatatgagaatcttgatgatgctgc 116




>55045_zma-miR172f:pmrd
          Length = 135

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgggaatcttgatgatgctgc 119
           |||||||||||||||||||||
Sbjct: 113 tgggaatcttgatgatgctgc 133




>55044_zma-miR172e:pmrd
          Length = 174

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgggaatcttgatgatgctgc 119
           |||||||||||||||||||||
Sbjct: 133 tgggaatcttgatgatgctgc 153




>54464_sbi-miR172b:pmrd
          Length = 170

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgggaatcttgatgatgctgc 119
           |||||||||||||||||||||
Sbjct: 148 tgggaatcttgatgatgctgc 168




>52845_ptc-miRf11023-akr:pmrd
          Length = 133

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 4  ggagcatcatcaagattcaca 24
          |||||||||||||||||||||
Sbjct: 9  ggagcatcatcaagattcaca 29




>51903_ptc-miRf10081-akr:pmrd
          Length = 147

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 4  ggagcatcatcaagattcaca 24
          |||||||||||||||||||||
Sbjct: 16 ggagcatcatcaagattcaca 36




>51699_ptc-miR172b:pmrd
          Length = 140

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 4  ggagcatcatcaagattcaca 24
          |||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcaca 33




>51344_ppd-miR172b:pmrd
          Length = 139

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 4   ggagcatcatcaagattcaca 24
           |||||||||||||||||||||
Sbjct: 127 ggagcatcatcaagattcaca 107




>51343_ppd-miR172a:pmrd
          Length = 139

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 4  ggagcatcatcaagattcaca 24
          |||||||||||||||||||||
Sbjct: 11 ggagcatcatcaagattcaca 31




>48907_osa-miR172b:pmrd
          Length = 238

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgggaatcttgatgatgctgc 119
           |||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgc 226




>47734_ath-miRf10634-akr:pmrd
          Length = 138

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 99  tgggaatcttgatgatgctgc 119
           |||||||||||||||||||||
Sbjct: 40  tgggaatcttgatgatgctgc 20




>46988_ath-miR172e:pmrd
          Length = 125

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 99  tgggaatcttgatgatgctgc 119
           |||||||||||||||||||||
Sbjct: 93  tgggaatcttgatgatgctgc 113




>54840_vvi-miR172d:pmrd
          Length = 109

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 92  tttgatatgggaatcttgatgatgctgc 119
           ||||| ||| ||||||||||||||||||
Sbjct: 70  tttgagatgagaatcttgatgatgctgc 97




>48571_gma-miR172b:pmrd
          Length = 153

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 92  tttgatatgggaatcttgatgatgctgc 119
           |||||| || ||||||||||||||||||
Sbjct: 105 tttgatgtgagaatcttgatgatgctgc 132




>48410_bra-miR172b:pmrd
          Length = 107

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  atatgggaatcttgatgatgctgc 119
           ||||| ||||||||||||||||||
Sbjct: 77  atatgagaatcttgatgatgctgc 100




>48409_bra-miR172b:pmrd
          Length = 107

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  atatgggaatcttgatgatgctgc 119
           ||||| ||||||||||||||||||
Sbjct: 77  atatgagaatcttgatgatgctgc 100




>48408_bra-miR172a:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  atatgggaatcttgatgatgctgc 119
           ||||| ||||||||||||||||||
Sbjct: 82  atatgagaatcttgatgatgctgc 105




>48388_bol-miR172b:pmrd
          Length = 107

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  atatgggaatcttgatgatgctgc 119
           ||||| ||||||||||||||||||
Sbjct: 77  atatgagaatcttgatgatgctgc 100




>48387_bol-miR172a:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  atatgggaatcttgatgatgctgc 119
           ||||| ||||||||||||||||||
Sbjct: 82  atatgagaatcttgatgatgctgc 105




>47664_ath-miRf10564-akr:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  atatgggaatcttgatgatgctgc 119
           ||||| ||||||||||||||||||
Sbjct: 70  atatgagaatcttgatgatgctgc 93




>46985_ath-miR172b:pmrd
          Length = 95

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  atatgggaatcttgatgatgctgc 119
           ||||| ||||||||||||||||||
Sbjct: 66  atatgagaatcttgatgatgctgc 89




>46984_ath-miR172b:pmrd
          Length = 95

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  atatgggaatcttgatgatgctgc 119
           ||||| ||||||||||||||||||
Sbjct: 66  atatgagaatcttgatgatgctgc 89