miRNEST 2.0, an integrative microRNA resource :: BLAST
>54839_vvi-miR172c:pmrd
Length = 138
Score = 216 bits (109), Expect = 3e-57
Identities = 121/125 (96%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgatggtgacttat 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 11 ggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgatggtgactttt 70
Query: 64 gtggtcccttcctacactccgatggctctttgatatgggaatcttgatgatgctgccgtg 123
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct: 71 gtggtcccttcctacactccgatggctctttgatgtgggaatcttgatgatgctgcagcg 130
Query: 124 gcaat 128
|||||
Sbjct: 131 gcaat 135
>53842_ptc-miRf12020-akr:pmrd
Length = 136
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaag 26
|||||||||||||||||||||||
Sbjct: 9 ggagcatcatcaagattcacaag 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgc 119
|||||||||||||||||||||
Sbjct: 108 tgggaatcttgatgatgctgc 128
>52375_ptc-miRf10553-akr:pmrd
Length = 136
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaag 26
|||||||||||||||||||||||
Sbjct: 9 ggagcatcatcaagattcacaag 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgc 119
|||||||||||||||||||||
Sbjct: 108 tgggaatcttgatgatgctgc 128
>51704_ptc-miR172g:pmrd
Length = 143
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaag 26
|||||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcacaag 35
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgccgtggcaat 128
||||||||||||||||||||| | ||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggcaat 141
>51701_ptc-miR172d:pmrd
Length = 182
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 97 tatgggaatcttgatgatgctgc 119
|||||||||||||||||||||||
Sbjct: 149 tatgggaatcttgatgatgctgc 171
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 gcatcatcaagattcacaag 26
||||||||||||||||||||
Sbjct: 16 gcatcatcaagattcacaag 35
>53739_ptc-miRf11917-akr:pmrd
Length = 143
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 atgggaatcttgatgatgctgc 119
||||||||||||||||||||||
Sbjct: 105 atgggaatcttgatgatgctgc 126
>52835_ptc-miRf11013-akr:pmrd
Length = 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 98 atgggaatcttgatgatgctgc 119
||||||||||||||||||||||
Sbjct: 35 atgggaatcttgatgatgctgc 14
>52315_ptc-miRf10493-akr:pmrd
Length = 141
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 atgggaatcttgatgatgctgc 119
||||||||||||||||||||||
Sbjct: 104 atgggaatcttgatgatgctgc 125
>51948_ptc-miRf10126-akr:pmrd
Length = 152
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgccgtggcaat 128
||||||||||||||||||||| | ||||||
Sbjct: 116 tgggaatcttgatgatgctgcagcggcaat 145
>51901_ptc-miRf10079-akr:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 98 atgggaatcttgatgatgctgc 119
||||||||||||||||||||||
Sbjct: 33 atgggaatcttgatgatgctgc 12
>51705_ptc-miR172h:pmrd
Length = 143
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgccgtggcaat 128
||||||||||||||||||||| | ||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggcaat 141
>51702_ptc-miR172e:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 atgggaatcttgatgatgctgc 119
||||||||||||||||||||||
Sbjct: 101 atgggaatcttgatgatgctgc 122
>48151_ath-miRf11051-akr:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaa 25
||||||||||||||||||||||
Sbjct: 18 ggagcatcatcaagattcacaa 39
>47855_ath-miRf10755-akr:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 4 ggagcatcatcaagattcacaa 25
||||||||||||||||||||||
Sbjct: 116 ggagcatcatcaagattcacaa 95
>47545_ath-miRf10445-akr:pmrd
Length = 131
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaa 25
||||||||||||||||||||||
Sbjct: 17 ggagcatcatcaagattcacaa 38
>46986_ath-miR172c:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcacaa 25
||||||||||||||||||||||
Sbjct: 18 ggagcatcatcaagattcacaa 39
>46883_aqc-miR172b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 98 atgggaatcttgatgatgctgc 119
||||||||||||||||||||||
Sbjct: 83 atgggaatcttgatgatgctgc 104
>46882_aqc-miR172a:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 tgatatgggaatcttgatgatgctgc 119
||||||| ||||||||||||||||||
Sbjct: 91 tgatatgagaatcttgatgatgctgc 116
>55045_zma-miR172f:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgc 119
|||||||||||||||||||||
Sbjct: 113 tgggaatcttgatgatgctgc 133
>55044_zma-miR172e:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgc 119
|||||||||||||||||||||
Sbjct: 133 tgggaatcttgatgatgctgc 153
>54464_sbi-miR172b:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgc 119
|||||||||||||||||||||
Sbjct: 148 tgggaatcttgatgatgctgc 168
>52845_ptc-miRf11023-akr:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcaca 24
|||||||||||||||||||||
Sbjct: 9 ggagcatcatcaagattcaca 29
>51903_ptc-miRf10081-akr:pmrd
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcaca 24
|||||||||||||||||||||
Sbjct: 16 ggagcatcatcaagattcaca 36
>51699_ptc-miR172b:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcaca 24
|||||||||||||||||||||
Sbjct: 13 ggagcatcatcaagattcaca 33
>51344_ppd-miR172b:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 4 ggagcatcatcaagattcaca 24
|||||||||||||||||||||
Sbjct: 127 ggagcatcatcaagattcaca 107
>51343_ppd-miR172a:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 4 ggagcatcatcaagattcaca 24
|||||||||||||||||||||
Sbjct: 11 ggagcatcatcaagattcaca 31
>48907_osa-miR172b:pmrd
Length = 238
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgc 119
|||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgc 226
>47734_ath-miRf10634-akr:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 99 tgggaatcttgatgatgctgc 119
|||||||||||||||||||||
Sbjct: 40 tgggaatcttgatgatgctgc 20
>46988_ath-miR172e:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 tgggaatcttgatgatgctgc 119
|||||||||||||||||||||
Sbjct: 93 tgggaatcttgatgatgctgc 113
>54840_vvi-miR172d:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 92 tttgatatgggaatcttgatgatgctgc 119
||||| ||| ||||||||||||||||||
Sbjct: 70 tttgagatgagaatcttgatgatgctgc 97
>48571_gma-miR172b:pmrd
Length = 153
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 92 tttgatatgggaatcttgatgatgctgc 119
|||||| || ||||||||||||||||||
Sbjct: 105 tttgatgtgagaatcttgatgatgctgc 132
>48410_bra-miR172b:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 96 atatgggaatcttgatgatgctgc 119
||||| ||||||||||||||||||
Sbjct: 77 atatgagaatcttgatgatgctgc 100
>48409_bra-miR172b:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 96 atatgggaatcttgatgatgctgc 119
||||| ||||||||||||||||||
Sbjct: 77 atatgagaatcttgatgatgctgc 100
>48408_bra-miR172a:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 96 atatgggaatcttgatgatgctgc 119
||||| ||||||||||||||||||
Sbjct: 82 atatgagaatcttgatgatgctgc 105
>48388_bol-miR172b:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 96 atatgggaatcttgatgatgctgc 119
||||| ||||||||||||||||||
Sbjct: 77 atatgagaatcttgatgatgctgc 100
>48387_bol-miR172a:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 96 atatgggaatcttgatgatgctgc 119
||||| ||||||||||||||||||
Sbjct: 82 atatgagaatcttgatgatgctgc 105
>47664_ath-miRf10564-akr:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 96 atatgggaatcttgatgatgctgc 119
||||| ||||||||||||||||||
Sbjct: 70 atatgagaatcttgatgatgctgc 93
>46985_ath-miR172b:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 96 atatgggaatcttgatgatgctgc 119
||||| ||||||||||||||||||
Sbjct: 66 atatgagaatcttgatgatgctgc 89
>46984_ath-miR172b:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 96 atatgggaatcttgatgatgctgc 119
||||| ||||||||||||||||||
Sbjct: 66 atatgagaatcttgatgatgctgc 89