miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54782_vvi-miR160e:pmrd
Length = 104
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 11 aatattgttctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgaca 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatattgttctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgaca 60
Query: 71 accttcctatttggcatgaggggagtcaagcaggcgaaacac 112
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accttcctatttggcatgaggggagtcaagcaggcgaaacac 102
>54779_vvi-miR160b:pmrd
Length = 104
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 11 aatattgttctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgaca 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatattgttctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgaca 60
Query: 71 accttcctatttggcatgaggggagtcaagcaggcgaaacac 112
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accttcctatttggcatgaggggagtcaagcaggcgaaacac 102
>51612_ptc-miR160e:pmrd
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttccta 79
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||
Sbjct: 10 ctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggcaacctttcta 69
Query: 80 tttggcatgaggggagtcaagcaggc 105
|||||||||||||||||| |||||||
Sbjct: 70 tttggcatgaggggagtcgagcaggc 95
>51613_ptc-miR160f:pmrd
Length = 100
Score = 109 bits (55), Expect = 5e-25
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttcct 78
||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||
Sbjct: 9 tctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggcaacctctct 68
Query: 79 atttggcatgaggggagtcaagcaggc 105
| ||||||||||||||||| ||||||
Sbjct: 69 aactggcatgaggggagtcacgcaggc 95
>46864_aqc-miR160a:pmrd
Length = 83
Score = 85.7 bits (43), Expect = 7e-18
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttcctat 80
|||||||||||||| ||||||||||||||||||| | |||| |||||||| |||| |||
Sbjct: 1 tgcctggctccctggatgccatctaagaagcttg-tcaagaatgttgacaccctttctag 59
Query: 81 ttggcatgaggggagtcaagcag 103
||||||| |||||||||| ||||
Sbjct: 60 ttggcatcaggggagtcacgcag 82
>54778_vvi-miR160a:pmrd
Length = 103
Score = 77.8 bits (39), Expect = 2e-15
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttcct 78
|||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||
Sbjct: 9 tctgcctggctccctgaatgccatctaagaagcttg-tcaaggttgttgactctcttcct 67
Query: 79 atttggcatgaggggagtcaagcaggc 105
| ||||||| || ||||||| ||||||
Sbjct: 68 agttggcatcagaggagtcatgcaggc 94
>48831_osa-miR160f:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccatc 43
||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
>54409_sbi-miR160f:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccatc 43
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgaatgccatc 23
>51614_ptc-miR160g:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatctaagaa 49
|||||||||||||||| |||||| |||||||
Sbjct: 9 tctgcctggctccctggatgccaactaagaa 39
>54574_smo-miR160a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatct 44
|||||||||||||||| |||||||||
Sbjct: 9 tctgcctggctccctgtatgccatct 34
>53071_ptc-miRf11249-akr:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 20 ctgcctggctccctgaatgccatctaagaa 49
||||||||||||||| |||||| |||||||
Sbjct: 82 ctgcctggctccctggatgccaactaagaa 53
>50560_osa-miRf11345-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 gcctggctccctgaatgccatc 43
||||||||||||||||||||||
Sbjct: 1 gcctggctccctgaatgccatc 22
>54575_smo-miR160b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccatctaagaagc 51
||||||||||||||| |||||| || ||||||
Sbjct: 12 ctgcctggctccctgtatgccacctgagaagc 43
>48704_mtr-miR160e:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccatctaagaagct 52
|||||||||||||| ||||||| || ||||||
Sbjct: 6 tgcctggctccctgtatgccatatatgaagct 37
>48702_mtr-miR160b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccatctaagaagct 52
|||||||||||||| ||||||| || ||||||
Sbjct: 6 tgcctggctccctgtatgccatatatgaagct 37
