miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48749_mtr-miR398a:pmrd
Length = 77
Score = 153 bits (77), Expect = 3e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 21 cagggtcgacatgagagcacatgaagctatcatggttgtctatgttatccaactcatgtg 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagggtcgacatgagagcacatgaagctatcatggttgtctatgttatccaactcatgtg 60
Query: 81 ttctcaggtcgcccctg 97
|||||||||||||||||
Sbjct: 61 ttctcaggtcgcccctg 77
>54876_vvi-miR398c:pmrd
Length = 88
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 73 ctcatgtgttctcaggtcgcccctgctg 100
||||||||||||||||||||||||||||
Sbjct: 54 ctcatgtgttctcaggtcgcccctgctg 81
>54875_vvi-miR398b:pmrd
Length = 88
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 73 ctcatgtgttctcaggtcgcccctgctg 100
||||||||||||||||||||||||||||
Sbjct: 54 ctcatgtgttctcaggtcgcccctgctg 81
>54744_tae-miR2025:pmrd
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 70 caactcatgtgttctcaggtcgcccctgctg 100
|||||||||||||||||||||||||| ||||
Sbjct: 64 caactcatgtgttctcaggtcgcccccgctg 94
>51745_ptc-miR398b:pmrd
Length = 85
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 tcatgtgttctcaggtcgcccctgc 98
|||||||||||||||||||||||||
Sbjct: 53 tcatgtgttctcaggtcgcccctgc 77
>51746_ptc-miR398c:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 catgtgttctcaggtcgcccctgc 98
||||||||||||||||||||||||
Sbjct: 66 catgtgttctcaggtcgcccctgc 89
>47014_ath-miR398c:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 tcatgtgttctcaggtcgcccctgctga 101
||||||||||||||||| ||||||||||
Sbjct: 82 tcatgtgttctcaggtcacccctgctga 109
>47013_ath-miR398b:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 tcatgtgttctcaggtcgcccctgctga 101
||||||||||||||||| ||||||||||
Sbjct: 83 tcatgtgttctcaggtcacccctgctga 110
>46890_aqc-miR398b:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 catgtgttctcaggtcgcccctgc 98
||||||||||||||||||||||||
Sbjct: 70 catgtgttctcaggtcgcccctgc 93
>48963_osa-miR398b:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 tgtgttctcaggtcgcccctgc 98
||||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctgc 79
>55090_zma-miR398c:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 catgtgttctcaggtcgcccc 95
|||||||||||||||||||||
Sbjct: 86 catgtgttctcaggtcgcccc 106
>55089_zma-miR398b:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 catgtgttctcaggtcgcccc 95
|||||||||||||||||||||
Sbjct: 119 catgtgttctcaggtcgcccc 139
>55088_zma-miR398a:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 75 catgtgttctcaggtcgcccc 95
|||||||||||||||||||||
Sbjct: 24 catgtgttctcaggtcgcccc 4
