miRNEST 2.0, an integrative microRNA resource :: BLAST
>48707_mtr-miR162d:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 12 ctggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatg 60
Query: 72 aatcggtcgataaacctctgcatccag 98
|||||||||||||||||||||||||||
Sbjct: 61 aatcggtcgataaacctctgcatccag 87
>48706_mtr-miR162c:pmrd
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 12 ctggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatg 27
Query: 72 aatcggtcgataaacctctgcatcca 97
||||||||||||||||||||||||||
Sbjct: 26 aatcggtcgataaacctctgcatcca 1
>48705_mtr-miR162b:pmrd
Length = 85
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 13 tggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatga 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaacatga 60
Query: 73 atcggtcgataaacctctgcatcca 97
|||||||||||||||||||||||||
Sbjct: 61 atcggtcgataaacctctgcatcca 85
>48545_gma-miR162a:pmrd
Length = 102
Score = 77.8 bits (39), Expect = 1e-15
Identities = 86/100 (86%), Gaps = 5/100 (5%)
Strand = Plus / Plus
Query: 8 gtcactggatgcagcggttcatcgatctgttcctgaatt-ttgtttgtctcgtaaaacaa 66
|||||||||||||||||||||||||||| ||||||||| |||||| | | | ||
Sbjct: 6 gtcactggatgcagcggttcatcgatctcttcctgaatcgttgtttaac----atcagaa 61
Query: 67 acatgaatcggtcgataaacctctgcatccagcgctcact 106
||||||||| |||||||||||||||||||||||||||||
Sbjct: 62 ccatgaatcgatcgataaacctctgcatccagcgctcact 101
>54784_vvi-miR162:pmrd
Length = 103
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 8 gtcactggatgcagcggttcatcgatctgttcctgaa 44
|||||||||||||||||||||||||||| ||||||||
Sbjct: 5 gtcactggatgcagcggttcatcgatctcttcctgaa 41
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccagcgctcact 106
|||||||||||||||||||||||||||||| |||||
Sbjct: 66 gaatcggtcgataaacctctgcatccagcgttcact 101
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 9e-11
Identities = 81/96 (84%), Gaps = 5/96 (5%)
Strand = Plus / Minus
Query: 10 cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 66
||||||| |||||||||||||||||| |||||| |||||| |||| | | | | ||
Sbjct: 97 cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 40
Query: 67 acatgaatcggtcgataaacctctgcatccagcgct 102
||||||| || |||||||||||||||||||||||||
Sbjct: 39 acatgaaccgatcgataaacctctgcatccagcgct 4
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 9e-11
Identities = 81/96 (84%), Gaps = 5/96 (5%)
Strand = Plus / Minus
Query: 10 cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 66
||||||| |||||||||||||||||| |||||| |||||| |||| | | | | ||
Sbjct: 97 cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 40
Query: 67 acatgaatcggtcgataaacctctgcatccagcgct 102
||||||| || |||||||||||||||||||||||||
Sbjct: 39 acatgaaccgatcgataaacctctgcatccagcgct 4
>51616_ptc-miR162a:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 9e-11
Identities = 81/96 (84%), Gaps = 5/96 (5%)
Strand = Plus / Plus
Query: 10 cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 66
||||||| |||||||||||||||||| |||||| |||||| |||| | | | | ||
Sbjct: 9 cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 66
Query: 67 acatgaatcggtcgataaacctctgcatccagcgct 102
||||||| || |||||||||||||||||||||||||
Sbjct: 67 acatgaaccgatcgataaacctctgcatccagcgct 102
>48546_gma-miR162m:pmrd
Length = 367
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccagcgctcacttt 108
|||||||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctcacttt 31
>48493_ghr-miR162a:pmrd
Length = 148
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 67 acatgaatcggtcgataaacctctgcatccagcgc 101
|||||||||| ||||||||||||||||||||||||
Sbjct: 83 acatgaatcgatcgataaacctctgcatccagcgc 117
>48423_cpa-miR162a:pmrd
Length = 109
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 66 aacatgaatcggtcgataaacctctgcatccagcg 100
||||||||||| |||||||||||||||||||||||
Sbjct: 68 aacatgaatcgatcgataaacctctgcatccagcg 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 8 gtcactggatgcagcggttcatcgatctgttcctg 42
||||||||| |||||||||||||||||| ||||||
Sbjct: 9 gtcactggaggcagcggttcatcgatctcttcctg 43
>54948_zma-miR162b:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccag 98
||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccag 98
||||||||||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>54387_rco-miR162:pmrd
Length = 96
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 68 catgaatcggtcgataaacctctgcatccagc 99
||||||||| ||||||||||||||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatccagc 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 10 cactggatgcagcggttcatcgatctgttcctg 42
||||||| |||||||||||||||||| ||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
>48685_lsa-miR162:pmrd
Length = 89
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 78 tcgataaacctctgcatccagcgctcac 105
||||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctcac 28
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 71 gaatcggtcgataaacctctgcatccagcgct 102
|||||| |||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccagcgct 11
>46938_ath-miR162b:pmrd
Length = 111
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccagcgct 102
|||||| |||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccagcgct 103
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 10 cactggatgcagcggttcatcgatctgttcctgaa 44
||||||| |||||||||||||||||| ||||||||
Sbjct: 96 cactggaggcagcggttcatcgatcttttcctgaa 62
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 10 cactggatgcagcggttcatcgatctgttcctgaa 44
||||||| |||||||||||||||||| ||||||||
Sbjct: 98 cactggaggcagcggttcatcgatcttttcctgaa 64
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 10 cactggatgcagcggttcatcgatctgttcctgaa 44
||||||| |||||||||||||||||| ||||||||
Sbjct: 98 cactggaggcagcggttcatcgatcttttcctgaa 64
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 10 cactggatgcagcggttcatcgatctgttcctgaa 44
||||||| |||||||||||||||||| ||||||||
Sbjct: 96 cactggaggcagcggttcatcgatcttttcctgaa 62
>51618_ptc-miR162c:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 10 cactggatgcagcggttcatcgatctgttcctgaa 44
||||||| |||||||||||||||||| ||||||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcctgaa 43
>51617_ptc-miR162b:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 10 cactggatgcagcggttcatcgatctgttcctgaa 44
||||||| |||||||||||||||||| ||||||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcctgaa 43
>48690_mdo-miR162:pmrd
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 68 catgaatcggtcgataaacctctgcatccag 98
||||||||||||||||||||| |||||||||
Sbjct: 58 catgaatcggtcgataaacctttgcatccag 88
>48682_llu-miR162:pmrd
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 68 catgaatcggtcgataaacctctgcatccag 98
||||||||| |||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatccag 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 12 ctggatgcagcggttcatcgatctgttcctgaattt 47
||||| ||||||||| |||||||| |||||||||||
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctgaattt 36
>46937_ath-miR162a:pmrd
Length = 140
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 68 catgaatcggtcgataaacctctgcatccagcg 100
||||||| | |||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccagcg 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 ctggatgcagcggttcatcgatctgttcctg 42
||||| |||||||||||||||||| ||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
>48834_osa-miR162a:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccag 98
|||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48835_osa-miR162b:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccagcgctcacttt 108
|||||| ||||||| ||||||||||||| ||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccagatctcacttt 134
>48836_osa-miR162m:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 71 gaatcggtcgataaacctctgcatccag 98
|||||| ||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
