miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54436_sbi-miR168:pmrd
Length = 106
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatc 69
Query: 61 ccgccttgcaccaagtgaatccgagccg 88
||||||||||||||||||||||||||||
Sbjct: 70 ccgccttgcaccaagtgaatccgagccg 97
>54999_zma-miR168a:pmrd
Length = 104
Score = 105 bits (53), Expect = 5e-24
Identities = 80/88 (90%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 ccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatc 60
||||||||||||||||||||||||||||||||| |||||| | | |||||||| ||||
Sbjct: 10 ccgcctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatc 67
Query: 61 ccgccttgcaccaagtgaatccgagccg 88
||||||||||||||||||||| ||||||
Sbjct: 68 ccgccttgcaccaagtgaatcggagccg 95
>54636_sof-miR168a:pmrd
Length = 104
Score = 105 bits (53), Expect = 5e-24
Identities = 80/88 (90%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 ccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatc 60
||||||||||||||||||||||||||||||||| |||||| | | |||||||| ||||
Sbjct: 10 ccgcctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatc 67
Query: 61 ccgccttgcaccaagtgaatccgagccg 88
||||||||||||||||||||| ||||||
Sbjct: 68 ccgccttgcaccaagtgaatcggagccg 95
>55000_zma-miR168b:pmrd
Length = 104
Score = 89.7 bits (45), Expect = 3e-19
Identities = 75/84 (89%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 5 ctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgc 64
||||||||||||||||||||||||||||| |||||| | | |||||||| ||||||||
Sbjct: 14 ctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatcccgc 71
Query: 65 cttgcaccaagtgaatccgagccg 88
|||||| |||||||||| ||||||
Sbjct: 72 cttgcatcaagtgaatcggagccg 95
>48873_osa-miR168a:pmrd
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 2 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 60
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
Query: 61 ccgccttgcaccaagtgaatccgagccg 88
||||||||||||||||||||| ||||||
Sbjct: 60 ccgccttgcaccaagtgaatcggagccg 87
>48872_osa-miR168a:pmrd
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 2 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 60
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
Query: 61 ccgccttgcaccaagtgaatccgagccg 88
||||||||||||||||||||| ||||||
Sbjct: 60 ccgccttgcaccaagtgaatcggagccg 87
>48871_osa-miR168a:pmrd
Length = 87
Score = 79.8 bits (40), Expect = 3e-16
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 2 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 60
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 59
Query: 61 ccgccttgcaccaagtgaatccgagccg 88
||||||||||||||||||||| ||||||
Sbjct: 60 ccgccttgcaccaagtgaatcggagccg 87
>54637_sof-miR168b:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 5e-15
Identities = 72/81 (88%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 8 gggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgcctt 67
|||||||||||| ||||||||||||| |||||| || |||||||| |||||||||||
Sbjct: 17 gggctcgcttgg-gcagatcgggacccgccgcccggcc--gacgggacggatcccgcctt 73
Query: 68 gcaccaagtgaatccgagccg 88
|||||||||||||| ||||||
Sbjct: 74 gcaccaagtgaatcggagccg 94
>55002_zma-miR168m:pmrd
Length = 65
Score = 71.9 bits (36), Expect = 7e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 71
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 58
Query: 72 caagtga 78
|||||||
Sbjct: 59 caagtga 65
>54655_ssp-miR168:pmrd
Length = 65
Score = 71.9 bits (36), Expect = 7e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 71
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 58
Query: 72 caagtga 78
|||||||
Sbjct: 59 caagtga 65
>48661_hvv-miR168:pmrd
Length = 66
Score = 61.9 bits (31), Expect = 7e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 71
|||||||||||||||||||||| ||||| || | |||||| | |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggaccctccgccc-gccccgacgggccggatcccgccttgcac 59
Query: 72 caagtga 78
|||||||
Sbjct: 60 caagtga 66
>48875_osa-miR168m:pmrd
Length = 67
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcagatcgggacctgccgccg 41
|||||||||||||||||||||| |||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgccg 30
>55001_zma-miR168c:pmrd
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 12 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccg-ccttgca 70
||||||| |||||||||||||| |||||| || | |||||||| ||||||| |||||||
Sbjct: 1 tcgcttgttgcagatcgggacccgccgccccgcgc-gacgggacggatcccgcccttgca 59
Query: 71 ccaagtga 78
|||||||
Sbjct: 60 tcaagtga 67
>48349_bna-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 gatcccgccttgcaccaagtgaatccgag 85
|||||||||||| | ||||||||||||||
Sbjct: 95 gatcccgccttgtatcaagtgaatccgag 123
